Concepedia

Perturbation-based Network Inference

Perturbation-Based Network Inference is a network inference methodology that identifies regulatory interactions by analyzing system-wide responses to targeted perturbations, distinguishing itself from correlation-based or observational methods through its reliance on directed, intervention-induced changes in network dynamics.

17

Publications

1.2K

Citations

76

Authors

49

Institutions

Publications per year

2017–2026

10

Parents

Publications

17

Elucidating Compound Mechanism of Action by Network Perturbation Analysis

Jung Hoon Woo, Yishai Shimoni, Wan Seok Yang et al. · Cell · 2015 · 353 citations · Full text

, , +14

DISCOVERY OF REGULATORY INTERACTIONS THROUGH PERTURBATION: INFERENCE AND EXPERIMENTAL DESIGN

Trey Ideker, VESTEINN THORSSONt, Richard M. Karp · 1999 · 281 citations

, , +12

Perturbation-based methods for explaining deep neural networks: A survey

Maksims Ivanovs, Roberts Kadiķis, Kaspars Ozols · Pattern Recognition Letters · 2021 · 197 citations · Full text

, , +14

Inference of signaling and gene regulatory networks by steady-state perturbation experiments: structure and accuracy

Michael Andrec, Boris Ν. Kholodenko, Ronald M. Levy et al. · Journal of Theoretical Biology · 2004 · 91 citations

, , +14

Network perturbation analysis in human bronchial epithelial cells following SARS-CoV2 infection

Giuseppe Nunnari, Cristina Sanfilippo, Paola Castrogiovanni et al. · Experimental Cell Research · 2020 · 66 citations · Full text

, , +16

1–5 of 17

Authors

76

  1. AT
    Andreas Tjärnberg

    Science for Life Laboratory, Sweden

    2 publications · 34 citations

    2

    h-index

  2. ED
    Eduardo D. Sontag

    Rutgers, The State University of New Jersey, United States

    2 publications · 118 citations

    2

    h-index

  3. EL
    Erik L. L. Sonnhammer

    Stockholm University, Sweden

    2 publications · 34 citations

    2

    h-index

  4. TE
    Torbjörn E. M. Nordling

    National Cheng Kung University, Taiwan

    2 publications · 34 citations

    2

    h-index

  5. YS
    Yishai Shimoni

    Hebrew University of Jerusalem, Israel

    1 publications · 353 citations

    1

    h-index

1–5 of 76

Institutions

49

  1. Rutgers, The State University of New Jersey

    New Brunswick, United States

    2 h-index

    4 publications

    300 citations

  2. Science for Life Laboratory

    Stockholm, Sweden

    2 h-index

    10 publications

    170 citations

  3. Uppsala University

    Uppsala, Sweden

    2 h-index

    3 publications

    51 citations

  4. Stockholm University

    Stockholm, Sweden

    2 h-index

    7 publications

    119 citations

  5. Center for Systems Biology

    Boston, United States

    2 h-index

    3 publications

    92 citations

  6. University of Washington

    Seattle, United States

    2 h-index

    4 publications

    638 citations

  7. National Cheng Kung University

    Tainan City, Taiwan

    2 h-index

    2 publications

    34 citations

  8. University of Messina

    Messina, Italy

    1 h-index

    1 publications

    66 citations

1–8 of 49

Venues

  1. Scientific Reports

    2 publications · 34 citations

    2

    h-index

  2. Neural Networks

    1 publications · 23 citations

    1

    h-index

  3. Experimental Cell Research

    ECR · 1 publications · 66 citations

    1

    h-index

  4. Nonlinear Dynamics

    1 publications · 21 citations

    1

    h-index

  5. Biosystems

    1 publications · 28 citations

    1

    h-index

1–5