Concepedia

Peak Calling

Peak Calling is a computational method in epigenomic data analysis that identifies regions of enrichment in sequencing data, distinguishing itself by detecting statistically significant loci of protein-DNA interactions or chromatin modifications from high-throughput assays such as ChIP-seq or ATAC-seq.

77

Publications

10.8K

Citations

337

Authors

177

Institutions

Publications per year

2017–2026

19

Parents

Publications

77

ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization

Guangchuang Yu, Li-Gen Wang, Qing‐Yu He · Bioinformatics · 2015 · 4.7K citations

, , +9

Peak calling by Sparse Enrichment Analysis for CUT&RUN chromatin profiling

Michael P. Meers, Dan Tenenbaum, Steven Henikoff · Epigenetics & Chromatin · 2019 · 598 citations · Full text

, , +13

PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls

Joel Rozowsky, Ghia Euskirchen, Raymond K. Auerbach et al. · Nature Biotechnology · 2009 · 570 citations · Full text

, , +6

Improved peak-calling with MACS2

John M. Gaspar · bioRxiv (Cold Spring Harbor Laboratory) · 2018 · 330 citations · Full text

, , +11

Evaluation of Algorithm Performance in ChIP-Seq Peak Detection

Elizabeth G. Wilbanks, Marc T. Facciotti · PLoS ONE · 2010 · 291 citations · Full text

, , +11

1–5 of 77

Authors

337

  1. KS
    Katsuhiko Shirahige

    The University of Tokyo, Japan

    2 publications · 117 citations

    2

    h-index

  2. JR
    Jim R. Hughes

    University of Oxford, United Kingdom

    2 publications · 66 citations

    2

    h-index

  3. MZ
    Martin Zenke

    RWTH Aachen University, Germany

    2 publications · 133 citations

    2

    h-index

  4. MJ
    Martin J. Sergeant

    University of Warwick, United Kingdom

    2 publications · 66 citations

    2

    h-index

  5. IG
    Ivan G. Costa

    RWTH Aachen University, Germany

    2 publications · 133 citations

    2

    h-index

1–5 of 337

Institutions

177

  1. Inserm

    Paris, France

    5 h-index

    26 publications

    1K citations

  2. Centre National de la Recherche Scientifique

    Paris, France

    4 h-index

    22 publications

    608 citations

  3. Howard Hughes Medical Institute

    Chevy Chase, United States

    4 h-index

    9 publications

    981 citations

  4. University of Oxford

    Oxford, United Kingdom

    3 h-index

    13 publications

    444 citations

  5. University of California, Davis

    Davis, United States

    3 h-index

    19 publications

    2.2K citations

  6. University of California, San Francisco

    San Francisco, United States

    3 h-index

    8 publications

    907 citations

  7. University of Michigan

    Ann Arbor, United States

    3 h-index

    15 publications

    1.5K citations

  8. RWTH Aachen University

    Aachen, Germany

    2 h-index

    11 publications

    712 citations

1–8 of 177

Venues

  1. Bioinformatics

    17 publications · 5.6K citations

    16

    h-index

  2. BMC Bioinformatics

    9 publications · 762 citations

    9

    h-index

  3. Nucleic Acids Research

    7 publications · 605 citations

    7

    h-index

  4. PLoS ONE

    5 publications · 459 citations

    5

    h-index

  5. BMC Genomics

    5 publications · 198 citations

    5

    h-index

1–5