PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls

Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing

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The Human Genome Browser at UCSC

W. James Kent, Charles W. Sugnet, Terrence S. Furey et al. · Genome Research · 2002 · 10.9K citations · Full text

Life Sciences, Bioinformatics, Genetics +9

A Direct Approach to False Discovery Rates

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Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

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Life Sciences, Bioinformatics, Genetics +14

SOAP: short oligonucleotide alignment program

Ruiqiang Li, Yingrui Li, Karsten Kristiansen et al. · Bioinformatics · 2008 · 3.7K citations · Full text

Life Sciences, Bioinformatics, Molecular Biology +16