Concepedia

Pathway Benchmarking

Pathway Benchmarking is a systematic evaluation framework used in single-cell analysis to assess the accuracy, robustness, and biological relevance of computational methods for inferring pathway activity by comparing their performance against standardized datasets, metrics, and ground-truth references.

7

Publications

803

Citations

50

Authors

48

Institutions

Publications per year

2017–2026

7

Parents

Publications

7

Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data

Christian H. Holland, Jovan Tanevski, Javier Perales-Patón et al. · Genome biology · 2020 · 354 citations · Full text

, , +17

Benchmarking joint multi-omics dimensionality reduction approaches for the study of cancer

Laura Cantini, Pooya Zakeri, Céline Hernandez et al. · Nature Communications · 2021 · 241 citations · Full text

, , +12

Benchmarking algorithms for pathway activity transformation of single-cell RNA-seq data

Yaru Zhang, Yunlong Ma, Yukuan Huang et al. · Computational and Structural Biotechnology Journal · 2020 · 86 citations · Full text

, , +17

mitch: multi-contrast pathway enrichment for multi-omics and single-cell profiling data

Antony Kaspi, Mark Ziemann · BMC Genomics · 2020 · 66 citations · Full text

, , +17

Comparison of Resources and Methods to infer Cell-Cell Communication from Single-cell RNA Data

Daniel Dimitrov, Dénes Türei, Charlotte Boys et al. · bioRxiv (Cold Spring Harbor Laboratory) · 2021 · 22 citations · Full text

, , +10

1–5 of 7

Authors

50

  1. BS
    Bence Szalai

    Semmelweis University, Hungary

    2 publications · 376 citations

    2

    h-index

  2. JS
    Julio Sáez-Rodríguez

    Heidelberg University, Germany

    2 publications · 376 citations

    2

    h-index

  3. YZ
    Yaru Zhang

    Wenzhou Medical University, China

    1 publications · 86 citations

    1

    h-index

  4. JS
    James S. Nagai

    RWTH Aachen University, Germany

    1 publications · 22 citations

    1

    h-index

  5. QJ
    Qi Jiang

    Wenzhou Medical University, China

    1 publications · 86 citations

    1

    h-index

1–5 of 50

Institutions

48

  1. Semmelweis University

    Budapest, Hungary

    2 h-index

    2 publications

    376 citations

  2. RWTH Aachen University

    Aachen, Germany

    2 h-index

    4 publications

    752 citations

  3. University Hospital Heidelberg

    Heidelberg, Germany

    2 h-index

    11 publications

    1.6K citations

  4. Heidelberg University

    Heidelberg, Germany

    2 h-index

    13 publications

    2.3K citations

  5. Centrale Marseille

    Marseille, France

    1 h-index

    1 publications

    241 citations

  6. University of Chinese Academy of Sciences

    Beijing, China

    1 h-index

    1 publications

    86 citations

  7. Commissariat à l'Énergie Atomique et aux Énergies Alternatives

    Paris, France

    1 h-index

    1 publications

    241 citations

  8. Aix-Marseille Université

    Marseille, France

    1 h-index

    2 publications

    482 citations

1–8 of 48

Venues

  1. Nature Communications

    1 publications · 241 citations

    1

    h-index

  2. PLoS Computational Biology

    1 publications · 14 citations

    1

    h-index

  3. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 1 publications · 22 citations

    1

    h-index

  4. Genome biology

    1 publications · 354 citations

    1

    h-index

  5. 1

    h-index

1–5