Concepedia

Pan-genome Graphs

Pan-Genome Graphs is a computational data structure that represents the collective genomic variation within a species by encoding shared and variable genomic sequences as nodes and edges in a graph, enabling more comprehensive analysis of pan-genomic diversity compared to linear reference genomes.

58

Publications

6.5K

Citations

575

Authors

249

Institutions

Publications per year

2017–2026

50

Parents

Publications

58

Producing polished prokaryotic pangenomes with the Panaroo pipeline

Gerry Tonkin‐Hill, Neil MacAlasdair, Christopher Ruis et al. · Genome biology · 2020 · 1.3K citations · Full text

, , +15

The design and construction of reference pangenome graphs with minigraph

Heng Li, Xiaowen Feng, Chong Chu · Genome biology · 2020 · 500 citations · Full text

, , +17

A super pan-genomic landscape of rice

Lianguang Shang, Xiaoxia Li, Huiying He et al. · Cell Research · 2022 · 368 citations · Full text

, , +17

Indexing Graphs for Path Queries with Applications in Genome Research

Jouni Sirén, Niko Välimäki, Veli Mäkinen · IEEE/ACM Transactions on Computational Biology and Bioinformatics · 2014 · 332 citations

, , +17

Graphtyper enables population-scale genotyping using pangenome graphs

Hannes P. Eggertsson, Hákon Jónsson, Eirikur Hjartarson et al. · Nature Genetics · 2017 · 315 citations

, , +10

1–5 of 58

Authors

575

  1. EG
    Erik Garrison

    University of California, Santa Cruz, United States

    10 publications · 801 citations

    10

    h-index

  2. BP
    Benedict Paten

    University of California, Santa Cruz, United States

    8 publications · 398 citations

    8

    h-index

  3. AM
    Adam M. Novak

    University of California, Santa Cruz, United States

    7 publications · 344 citations

    7

    h-index

  4. JS
    Jouni Sirén

    University of California, Santa Cruz, United States

    6 publications · 523 citations

    6

    h-index

  5. JM
    Jordan M. Eizenga

    University of California, Santa Cruz, United States

    6 publications · 193 citations

    6

    h-index

1–5 of 575

Institutions

249

  1. Chinese Academy of Agricultural Sciences

    Beijing, China

    9 h-index

    60 publications

    16.5K citations

  2. University of California, Santa Cruz

    Santa Cruz, United States

    9 h-index

    55 publications

    2K citations

  3. Ministry of Agriculture and Rural Affairs

    Beijing, China

    7 h-index

    37 publications

    11.8K citations

  4. European Bioinformatics Institute

    Cambridge, United Kingdom

    7 h-index

    27 publications

    2.4K citations

  5. Harvard University

    Cambridge, United States

    7 h-index

    16 publications

    1.8K citations

  6. Cornell University

    Ithaca, United States

    6 h-index

    18 publications

    1.5K citations

  7. University of Tennessee Health Science Center

    Memphis, United States

    6 h-index

    22 publications

    2.7K citations

  8. Centre National de la Recherche Scientifique

    Paris, France

    6 h-index

    14 publications

    1.3K citations

1–8 of 249

Venues

  1. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 11 publications · 457 citations

    11

    h-index

  2. Bioinformatics

    8 publications · 680 citations

    8

    h-index

  3. Genome biology

    8 publications · 2.1K citations

    8

    h-index

  4. Nature Communications

    5 publications · 698 citations

    5

    h-index

  5. Nature Genetics

    3 publications · 713 citations

    3

    h-index

1–5