Concepedia

Pan-genome Annotation

Pan-Genome Annotation is a computational methodology that systematically identifies and characterizes functional genomic elements within the collective gene repertoire of a species, distinguishing itself by integrating sequence variability and structural diversity across multiple genomes into a unified annotation framework.

148

Publications

17.7K

Citations

1.4K

Authors

465

Institutions

Publications per year

2017–2026

106

Variants

Pangenome Annotation

Parents

Publications

148

Ensembl 2023

Fergal J. Martin, M Ridwan Amode, Alisha Aneja et al. · Nucleic Acids Research · 2022 · 1.1K citations · Full text

, , +14

Pan-Genome of Wild and Cultivated Soybeans

Yucheng Liu, Huilong Du, Pengcheng Li et al. · Cell · 2020 · 1K citations

, , +12

BPGA- an ultra-fast pan-genome analysis pipeline

Narendrakumar M. Chaudhari, Vinod K. Gupta, Chitra Dutta · Scientific Reports · 2016 · 1K citations · Full text

, , +16

RaGOO: fast and accurate reference-guided scaffolding of draft genomes

Michael Alonge, Sebastian Soyk, Srividya Ramakrishnan et al. · Genome biology · 2019 · 764 citations · Full text

, , +17

The tomato pan-genome uncovers new genes and a rare allele regulating fruit flavor

Lei Gao, Itay Gonda, Honghe Sun et al. · Nature Genetics · 2019 · 739 citations

, , +16

1–5 of 148

Authors

1.4K

  1. CN
    Candice N. Hirsch

    University of Minnesota, United States

    5 publications · 1.5K citations

    5

    h-index

  2. SO
    Shujun Ou

    Iowa State University, United States

    5 publications · 1.4K citations

    5

    h-index

  3. DW
    Doreen Ware

    Cold Spring Harbor Laboratory, United States

    5 publications · 1.8K citations

    5

    h-index

  4. DD
    Dick de Ridder

    Delft University of Technology, Netherlands

    4 publications · 436 citations

    4

    h-index

  5. JB
    Jochen Blom

    Justus-Liebig-Universität Gießen, Germany

    4 publications · 248 citations

    4

    h-index

1–5 of 1.4K

Institutions

465

  1. University of Georgia

    Athens, United States

    9 h-index

    30 publications

    9.6K citations

  2. Chinese Academy of Agricultural Sciences

    Beijing, China

    9 h-index

    57 publications

    18.4K citations

  3. Chinese Academy of Sciences

    Beijing, China

    8 h-index

    46 publications

    20.8K citations

  4. Cold Spring Harbor Laboratory

    Cold Spring Harbor, United States

    8 h-index

    46 publications

    14.3K citations

  5. University of Minnesota

    Minneapolis, United States

    7 h-index

    24 publications

    5.2K citations

  6. Robert W. Holley Center for Agriculture & Health

    Ithaca, United States

    6 h-index

    9 publications

    4.5K citations

  7. Wageningen University & Research

    Wageningen, The Netherlands

    6 h-index

    24 publications

    2.1K citations

  8. Joint Genome Institute

    Berkeley, United States

    6 h-index

    28 publications

    7.2K citations

1–8 of 465

Venues

  1. Frontiers in Microbiology

    13 publications · 800 citations

    12

    h-index

  2. Nucleic Acids Research

    8 publications · 3K citations

    8

    h-index

  3. BMC Genomics

    8 publications · 524 citations

    8

    h-index

  4. Bioinformatics

    6 publications · 334 citations

    6

    h-index

  5. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 6 publications · 292 citations

    6

    h-index

1–5