Candice N. Hirsch

Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline

Shujun Ou, Weija Su, Yi Liao et al. · Genome biology · 2019 · 1.4K citations · Full text

De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes

Matthew B. Hufford, Arun S. Seetharam, Margaret Woodhouse et al. · Science · 2021 · 681 citations · Full text

Structural Variation, Genetics, Dna Methylation +22

Insights into the Maize Pan-Genome and Pan-Transcriptome  

Candice N. Hirsch, Jillian M. Foerster, James M. Johnson et al. · The Plant Cell · 2014 · 583 citations · Full text

Transposable Elements Contribute to Activation of Maize Genes in Response to Abiotic Stress

Irina Makarevitch, Amanda J. Waters, Patrick T. West et al. · PLoS Genetics · 2015 · 452 citations · Full text

Biology, Plant Genetics, Gene Expression Response +15

An Expanded Maize Gene Expression Atlas based on RNA Sequencing and its Use to Explore Root Development

Scott Stelpflug, Rajandeep S. Sekhon, Brieanne Vaillancourt et al. · The Plant Genome · 2015 · 416 citations · Full text

Plant Genetics, Root Development, Genetics +19