Concepedia

Metagenomic Databases

Metagenomic Databases is a specialized type of genomic database that archives and organizes genetic material recovered directly from environmental samples, enabling the study of microbial diversity and functional potential without the requirement for laboratory cultivation.

244

Publications

33.2K

Citations

1.4K

Authors

545

Institutions

Publications per year

2017–2026

132

Parents

Publications

244

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes

Folker Meyer, Daniel Paarmann, M. D'Souza et al. · BMC Bioinformatics · 2008 · 3.6K citations · Full text

, , +15

Centrifuge: rapid and sensitive classification of metagenomic sequences

Daehwan Kim, Li Song, Florian P. Breitwieser et al. · Genome Research · 2016 · 1.5K citations · Full text

, , +15

The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata

Ioanna Pagani, Konstantinos Liolios, Jakob Jansson et al. · Nucleic Acids Research · 2011 · 1K citations · Full text

, , +15

RESCRIPt: Reproducible sequence taxonomy reference database management

Michael S. Robeson, Devon O’Rourke, Benjamin D. Kaehler et al. · PLoS Computational Biology · 2021 · 960 citations · Full text

, , +17

IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes

I-Min A. Chen, Ken Chu, Krishna Palaniappan et al. · Nucleic Acids Research · 2018 · 919 citations · Full text

, , +17

1–5 of 244

Authors

1.4K

  1. NC
    Nikos C. Kyrpides

    Joint Genome Institute, United States

    18 publications · 6.2K citations

    17

    h-index

  2. NI
    Natalia Ivanova

    Joint Genome Institute, United States

    12 publications · 4K citations

    11

    h-index

  3. KP
    Krishna Palaniappan

    Joint Genome Institute, United States

    10 publications · 3.4K citations

    10

    h-index

  4. IA
    I-Min A. Chen

    Joint Genome Institute, United States

    9 publications · 3.3K citations

    9

    h-index

  5. MH
    Marcel Huntemann

    Joint Genome Institute, United States

    9 publications · 3K citations

    9

    h-index

1–5 of 1.4K

Institutions

545

  1. Joint Genome Institute

    Berkeley, United States

    23 h-index

    211 publications

    75.3K citations

  2. Lawrence Berkeley National Laboratory

    Berkeley, United States

    19 h-index

    185 publications

    60.1K citations

  3. European Bioinformatics Institute

    Cambridge, United Kingdom

    10 h-index

    83 publications

    23K citations

  4. University of Chicago

    Chicago, United States

    9 h-index

    35 publications

    30.3K citations

  5. Argonne National Laboratory

    Lemont, United States

    9 h-index

    45 publications

    28.7K citations

  6. Max Planck Institute for Marine Microbiology

    Bremen, Germany

    6 h-index

    15 publications

    695 citations

  7. Fudan University

    Shanghai, China

    6 h-index

    15 publications

    1.3K citations

  8. Shanghai Institute for Science of Science

    Xuhui, China

    6 h-index

    15 publications

    1.3K citations

1–8 of 545

Venues

  1. Nucleic Acids Research

    42 publications · 10.4K citations

    38

    h-index

  2. PLoS ONE

    14 publications · 1.1K citations

    14

    h-index

  3. Bioinformatics

    16 publications · 1.7K citations

    14

    h-index

  4. Frontiers in Microbiology

    10 publications · 321 citations

    10

    h-index

  5. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 9 publications · 1.1K citations

    9

    h-index

1–5