Concepedia

Metabolomics-constrained Modeling

Metabolomics-Constrained Modeling is a genome-scale metabolic modeling approach that integrates experimentally measured metabolite abundance data to conditionally restrict metabolic flux predictions, thereby distinguishing itself from other constraint-based methods by explicitly incorporating metabolomics data as physiological boundaries.

11

Publications

549

Citations

76

Authors

36

Institutions

Publications per year

2017–2026

6

Parents

Publications

11

Regulatory mechanisms underlying coordination of amino acid and glucose catabolism in Escherichia coli

Mattia Zampieri, Manuel Hörl, Florian Hotz et al. · Nature Communications · 2019 · 154 citations · Full text

, , +17

Constraining the Flux Space Using Thermodynamics and Integration of Metabolomics Data

Keng Cher Soh, Vassily Hatzimanikatis · Methods in molecular biology · 2014 · 59 citations

, , +14

A model‐driven quantitative metabolomics analysis of aerobic and anaerobic metabolism in <i>E. coli</i> K‐12 MG1655 that is biochemically and thermodynamically consistent

Douglas McCloskey, Jon A. Gangoiti, Zachary A. King et al. · Biotechnology and Bioengineering · 2013 · 59 citations

, , +17

<i>Salmonella</i> modulates metabolism during growth under conditions that induce expression of virulence genes

Young‐Mo Kim, Brian J. Schmidt, Afshan S. Kidwai et al. · Molecular BioSystems · 2013 · 57 citations

, , +17

Rewiring of Metabolic Network in Mycobacterium tuberculosis During Adaptation to Different Stresses

Arshad Rizvi, Arvind Jaya Shankar, Tushar H. More et al. · Frontiers in Microbiology · 2019 · 47 citations · Full text

, , +17

1–5 of 11

Authors

76

  1. BØ
    Bernhard Ø. Palsson

    University of California San Diego, United States

    2 publications · 116 citations

    2

    h-index

  2. US
    Uwe Sauer

    ETH Zurich, Switzerland

    2 publications · 191 citations

    2

    h-index

  3. MZ
    Mattia Zampieri

    ETH Zurich, Switzerland

    2 publications · 191 citations

    2

    h-index

  4. LM
    Lavanya Madugulla

    Tata Consultancy Services (India), India

    1 publications · 47 citations

    1

    h-index

  5. AT
    Andrej Trauner

    University of Basel, Switzerland

    1 publications · 37 citations

    1

    h-index

1–5 of 76

Institutions

36

  1. University of San Diego

    San Diego, United States

    2 h-index

    6 publications

    348 citations

  2. University of California San Diego

    San Diego, United States

    2 h-index

    10 publications

    584 citations

  3. ETH Zurich

    Zurich, Switzerland

    2 h-index

    11 publications

    992 citations

  4. La Jolla Bioengineering Institute

    San Diego, United States

    2 h-index

    7 publications

    407 citations

  5. Georgia Institute of Technology

    Atlanta, United States

    1 h-index

    2 publications

    50 citations

  6. Universität Greifswald

    Greifswald, Germany

    1 h-index

    1 publications

    41 citations

  7. Innsbruck Medical University

    Innsbruck, Austria

    1 h-index

    4 publications

    164 citations

  8. National Centre for Cell Science

    Pune, India

    1 h-index

    5 publications

    235 citations

1–8 of 36

Venues

  1. Nature Communications

    2 publications · 195 citations

    2

    h-index

  2. Molecular BioSystems

    1 publications · 57 citations

    1

    h-index

  3. Phytomedicine

    1 publications · 37 citations

    1

    h-index

  4. Methods in molecular biology

    Book series · 1 publications · 59 citations

    1

    h-index

  5. Metabolites

    1 publications · 25 citations

    1

    h-index

1–5