Concepedia

Loop Reconstruction

Loop Reconstruction is a computational method in structural biology that specifically addresses the prediction and modeling of missing loop regions in protein structures by generating conformations that bridge the flanking secondary structural elements with geometric and stereochemical accuracy.

38

Publications

4.1K

Citations

151

Authors

57

Institutions

Publications per year

2017–2026

5

Parents

Publications

38

A hierarchical approach to all‐atom protein loop prediction

Matthew P. Jacobson, David L. Pincus, Chaya S. Rapp et al. · Proteins Structure Function and Bioinformatics · 2004 · 2.5K citations

, , +17

An automated classification of the structure of protein loops

Baldomero Oliva, Paul A. Bates, Enrique Querol et al. · Journal of Molecular Biology · 1997 · 196 citations

, , +12

Addition of Missing Loops and Domains to Protein Models by X-Ray Solution Scattering

Maxim V. Petoukhov, Nigel A. J. Eady, Katherine A. Brown et al. · Biophysical Journal · 2002 · 103 citations · Full text

, , +14

Protein Loop Modeling Using a New Hybrid Energy Function and Its Application to Modeling in Inaccurate Structural Environments

Hahnbeom Park, Gyu Rie Lee, Lim Heo et al. · PLoS ONE · 2014 · 90 citations · Full text

, , +17

Toward better refinement of comparative models: Predicting loops in inexact environments

Benjamin D. Sellers, Kai Zhu, Suwen Zhao et al. · Proteins Structure Function and Bioinformatics · 2008 · 84 citations · Full text

, , +17

1–5 of 38

Authors

151

  1. RA
    Richard A. Friesner

    Columbia University, United States

    4 publications · 2.7K citations

    4

    h-index

  2. KZ
    Kai Zhu

    Schrodinger (United States), United States

    3 publications · 197 citations

    3

    h-index

  3. AG
    Alexandre G. de Brevern

    Inserm, France

    2 publications · 88 citations

    2

    h-index

  4. MP
    Matthew P. Jacobson

    University of California, San Francisco, United States

    2 publications · 2.6K citations

    2

    h-index

  5. PA
    Paul A. Bates

    The Honourable Society of Lincoln's Inn, United Kingdom

    2 publications · 275 citations

    2

    h-index

1–5 of 151

Institutions

57

  1. Columbia University

    New York, United States

    4 h-index

    11 publications

    8.1K citations

  2. Schrodinger (United States)

    New York, United States

    3 h-index

    5 publications

    5.3K citations

  3. Yeshiva University

    New York, United States

    2 h-index

    3 publications

    2.6K citations

  4. University of California, San Francisco

    San Francisco, United States

    2 h-index

    3 publications

    2.7K citations

  5. The Honourable Society of Lincoln's Inn

    London, United Kingdom

    2 h-index

    11 publications

    1.1K citations

  6. Inserm

    Paris, France

    2 h-index

    7 publications

    288 citations

  7. Université Paris Cité

    Paris, France

    2 h-index

    7 publications

    288 citations

  8. MSB Medical School Berlin

    Berlin, Germany

    1 h-index

    4 publications

    128 citations

1–8 of 57

Venues

  1. Proteins Structure Function and Bioinformatics

    5 publications · 2.8K citations

    5

    h-index

  2. Journal of Molecular Biology

    JMB · 3 publications · 306 citations

    3

    h-index

  3. PLoS Computational Biology

    2 publications · 95 citations

    2

    h-index

  4. Biophysical Journal

    2 publications · 135 citations

    2

    h-index

  5. Journal of Computational Chemistry

    2 publications · 70 citations

    2

    h-index

1–5