Concepedia

Loop Modeling Benchmarking

Loop Modeling Benchmarking is a formal evaluation framework that systematically assesses the accuracy, efficiency, and generalizability of computational methods for predicting protein loop conformations by comparing their performance against standardized datasets and established metrics.

10

Publications

690

Citations

34

Authors

11

Institutions

Publications per year

2017–2026

4

Parents

Publications

10

Automated structure prediction of weakly homologous proteins on a genomic scale

Yang Zhang, Jeffrey Skolnick · Proceedings of the National Academy of Sciences · 2004 · 346 citations · Full text

, , +16

Blind prediction performance of RosettaAntibody 3.0: Grafting, relaxation, kinematic loop modeling, and full CDR optimization

Brian D. Weitzner, Daisuke Kuroda, Nicholas Marze et al. · Proteins Structure Function and Bioinformatics · 2014 · 104 citations · Full text

, , +17

Accurate Structure Prediction of CDR H3 Loops Enabled by a Novel Structure-Based C-Terminal Constraint

Brian D. Weitzner, Jeffrey J. Gray · The Journal of Immunology · 2016 · 52 citations · Full text

, , +15

Loopholes and missing links in protein modeling

Karen A. Rossi, Carolyn A. Weigelt, Akbar Nayeem et al. · Protein Science · 2007 · 37 citations · Full text

, , +16

Systematic Comparison of Amber and Rosetta Energy Functions for Protein Structure Evaluation

Aliza B. Rubenstein, Kristin Blacklock, Thi Hong Hai Nguyen et al. · Journal of Chemical Theory and Computation · 2018 · 29 citations · Full text

, , +17

1–5 of 10

Authors

34

  1. YS
    Yi Shang

    University of Missouri, United States

    2 publications · 56 citations

    2

    h-index

  2. SP
    Son P. Nguyen

    University of Missouri, United States

    2 publications · 56 citations

    2

    h-index

  3. DX
    Dong Xu

    University of Missouri, United States

    2 publications · 56 citations

    2

    h-index

  4. JJ
    Jeffrey J. Gray

    Johns Hopkins University, United States

    2 publications · 156 citations

    2

    h-index

  5. BD
    Brian D. Weitzner

    Johns Hopkins University, United States

    2 publications · 156 citations

    2

    h-index

1–5 of 34

Institutions

11

  1. Johns Hopkins University

    Baltimore, United States

    3 h-index

    8 publications

    651 citations

  2. University of Missouri

    Columbia, United States

    2 h-index

    8 publications

    224 citations

  3. University at Buffalo, State University of New York

    Buffalo, United States

    1 h-index

    2 publications

    692 citations

  4. Imperial College London

    London, United Kingdom

    1 h-index

    3 publications

    42 citations

  5. Vanderbilt University

    Nashville, United States

    1 h-index

    5 publications

    135 citations

  6. Johns Hopkins Medicine

    Baltimore, United States

    1 h-index

    1 publications

    104 citations

  7. University of Memphis

    Memphis, United States

    1 h-index

    4 publications

    100 citations

  8. Bristol-Myers Squibb (Germany)

    Munich, Germany

    1 h-index

    4 publications

    148 citations

1–8 of 11

Venues

  1. PLoS ONE

    2 publications · 41 citations

    2

    h-index

  2. Journal of Computer-Aided Molecular Design

    1 publications · 25 citations

    1

    h-index

  3. Journal of Chemical Theory and Computation

    JCTC · 1 publications · 29 citations

    1

    h-index

  4. Proteins Structure Function and Bioinformatics

    1 publications · 104 citations

    1

    h-index

  5. The Journal of Immunology

    JI · 1 publications · 52 citations

    1

    h-index

1–5