Concepedia

Indel-aware Alignment

Indel-Aware Alignment is a read mapping method that belongs to the class of sequence alignment techniques and specifically incorporates gaps in the alignment process to account for insertions and deletions (indels) between the sequencing read and the reference genome, thereby improving alignment accuracy in genomic regions prone to such variations.

9

Publications

4K

Citations

56

Authors

23

Institutions

Publications per year

2017–2026

3

Parents

Publications

9

The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote

Yang Liao, Gordon K. Smyth, Wei Shi · Nucleic Acids Research · 2013 · 3.4K citations · Full text

, , +17

SOAP3-dp: Fast, Accurate and Sensitive GPU-Based Short Read Aligner

Ruibang Luo, Thomas K. F. Wong, Jian-Qiao Zhu et al. · PLoS ONE · 2013 · 430 citations · Full text

, , +15

Evaluation of microRNA alignment techniques

Mark Ziemann, Antony Kaspi, Assam El‐Osta · RNA · 2016 · 64 citations · Full text

, , +17

Development of SNP and InDel markers via de novo transcriptome assembly in Sesamum indicum L.

Libin Wei, Hongmei Miao, Chun Li et al. · Molecular Breeding · 2014 · 51 citations

, , +14

Indel detection from DNA and RNA sequencing data with transIndel

Rendong Yang, Jamie L. Van Etten, Scott M. Dehm · BMC Genomics · 2018 · 44 citations · Full text

, , +14

1–5 of 9

Authors

56

  1. SY
    Siu‐Ming Yiu

    University of Hong Kong, Hong Kong SAR China

    2 publications · 459 citations

    2

    h-index

  2. JZ
    Jian-Qiao Zhu

    University of Warwick, United Kingdom

    2 publications · 459 citations

    2

    h-index

  3. LL
    Lap–Kei Lee

    University of Hong Kong, Hong Kong SAR China

    2 publications · 459 citations

    2

    h-index

  4. CL
    Chi-Man Liu

    University of Hong Kong, Hong Kong SAR China

    2 publications · 459 citations

    2

    h-index

  5. WZ
    Wenjuan Zhu

    BGI Group (China), China

    2 publications · 459 citations

    2

    h-index

1–5 of 56

Institutions

23

  1. National University of Defense Technology

    Changsha, China

    2 h-index

    4 publications

    918 citations

  2. Center for Life Sciences

    Beijing, China

    2 h-index

    2 publications

    459 citations

  3. University of Wisconsin–Madison

    Madison, United States

    2 h-index

    2 publications

    459 citations

  4. Peking University

    Beijing, China

    2 h-index

    2 publications

    459 citations

  5. University of Hong Kong

    Pok Fu Lam, Hong Kong

    2 h-index

    20 publications

    4.6K citations

  6. BGI Group (China)

    Shenzhen, China

    2 h-index

    8 publications

    1.8K citations

  7. Tobacco Research Institute

    Qingdao, China

    1 h-index

    1 publications

    15 citations

  8. Huazhong Agricultural University

    Wuhan, China

    1 h-index

    6 publications

    102 citations

1–8 of 23

Venues

  1. PLoS ONE

    2 publications · 459 citations

    2

    h-index

  2. Molecular Breeding

    2 publications · 68 citations

    2

    h-index

  3. RNA

    1 publications · 64 citations

    1

    h-index

  4. The Journal of Open Source Software

    JOSS · 1 publications · 18 citations

    1

    h-index

  5. BMC Genomics

    1 publications · 44 citations

    1

    h-index

1–5