Concepedia

Image Registration For Transcriptomics

Image Registration for Transcriptomics is a computational method that aligns spatially resolved transcriptomic data to a common coordinate system by leveraging morphological or molecular landmark correspondences, thereby enabling precise integration of gene expression profiles with histological features across multiple tissue sections or imaging modalities.

12

Publications

327

Citations

67

Authors

38

Institutions

Publications per year

2017–2026

5

Parents

Publications

12

Spatial transcriptomics using multiplexed deterministic barcoding in tissue

Johannes Wirth, Nina Huber, Kelvin Yin et al. · Nature Communications · 2023 · 40 citations · Full text

, , +15

Spatial landmark detection and tissue registration with deep learning

Markus Ekvall, Ludvig Bergenstråhle, Alma Andersson et al. · Nature Methods · 2024 · 33 citations · Full text

, , +14

Analyzing in situ gene expression in the mouse brain with image registration, feature extraction and block clustering

Manjunatha Jagalur, Chris Pal, Erik Learned-Miller et al. · BMC Bioinformatics · 2007 · 33 citations · Full text

, , +16

Extraction and comparison of gene expression patterns from 2D RNA <i>in situ</i> hybridization images

Daniel Mace, Nicole Varnado, Weiping Zhang et al. · Bioinformatics · 2009 · 33 citations · Full text

, , +17

Expression ratio evaluation in two-colour microarray experiments is significantly improved by correcting image misalignment

Thomas Li‐Ping Tang, Nicolas François, Annie Glatigny et al. · Bioinformatics · 2007 · 31 citations · Full text

, , +15

1–5 of 12

Authors

67

  1. EM
    Ekaterina Myasnikova

    Peter the Great St. Petersburg Polytechnic University, Russia

    2 publications · 56 citations

    2

    h-index

  2. UO
    Uwe Ohler

    Max Delbrück Center, Germany

    2 publications · 55 citations

    2

    h-index

  3. DM
    Daniel Mace

    Duke University, United States

    2 publications · 55 citations

    2

    h-index

  4. JR
    John Reinitz

    Stony Brook University, United States

    2 publications · 56 citations

    2

    h-index

  5. JL
    Ji‐Young Lee

    Seoul National University, South Korea

    1 publications · 22 citations

    1

    h-index

1–5 of 67

Institutions

38

  1. Centre National de la Recherche Scientifique

    Paris, France

    2 h-index

    13 publications

    355 citations

  2. Université Paris-Saclay

    Gif-sur-Yvette, France

    2 h-index

    13 publications

    355 citations

  3. Université Paris-Sud

    Orsay, France

    2 h-index

    11 publications

    309 citations

  4. Duke University

    Durham, United States

    2 h-index

    11 publications

    297 citations

  5. Computing Center

    Khabarovsk, Russia

    2 h-index

    2 publications

    56 citations

  6. Science for Life Laboratory

    Stockholm, Sweden

    1 h-index

    6 publications

    198 citations

  7. Helmholtz Association of German Research Centres

    Berlin, Germany

    1 h-index

    2 publications

    80 citations

  8. KTH Royal Institute of Technology

    Stockholm, Sweden

    1 h-index

    6 publications

    198 citations

1–8 of 38

Venues

  1. Bioinformatics

    3 publications · 86 citations

    3

    h-index

  2. PubMed

    Repository · 2 publications · 56 citations

    2

    h-index

  3. Journal of Scientific Computing

    1 publications · 21 citations

    1

    h-index

  4. Frontiers in Neuroinformatics

    1 publications · 23 citations

    1

    h-index

  5. Cells

    1 publications · 24 citations

    1

    h-index

1–5