Concepedia

Hybrid Transcriptome Assembly

Hybrid Transcriptome Assembly is a transcriptome reconstruction method that integrates sequencing data from multiple platforms, typically combining short-read and long-read RNA-seq technologies, to improve the accuracy, completeness, and contiguity of assembled transcripts.

46

Publications

2.4K

Citations

308

Authors

128

Institutions

Publications per year

2017–2026

26

Parents

Publications

46

Improved transcriptome assembly using a hybrid of long and short reads with StringTie

Alaina Shumate, Brandon Wong, Geo Pertea et al. · PLoS Computational Biology · 2022 · 480 citations · Full text

, , +17

Dissecting the Causal Mechanism of X-Linked Dystonia-Parkinsonism by Integrating Genome and Transcriptome Assembly

Tatsiana Aneichyk, William T. Hendriks, Rachita Yadav et al. · Cell · 2018 · 236 citations · Full text

, , +14

Comparative Analysis of Kabuli Chickpea Transcriptome with Desi and Wild Chickpea Provides a Rich Resource for Development of Functional Markers

Gaurav Agarwal, Shalu Jhanwar, Pushp Priya et al. · PLoS ONE · 2012 · 127 citations · Full text

, , +16

Quantitative RNA-Seq analysis in non-model species: assessing transcriptome assemblies as a scaffold and the utility of evolutionary divergent genomic reference species

Emily A. Hornett · BMC Genomics · 2012 · 99 citations · Full text

, , +14

Comprehensive Transcriptome Assembly of Chickpea (Cicer arietinum L.) Using Sanger and Next Generation Sequencing Platforms: Development and Applications

Himabindu Kudapa, Sarwar Azam, Andrew Sharpe et al. · PLoS ONE · 2014 · 97 citations · Full text

, , +17

1–5 of 46

Authors

308

  1. AD
    Andrey D. Prjibelski

    St Petersburg University, Russia

    3 publications · 89 citations

    3

    h-index

  2. EB
    Elena Bushmanova

    St Petersburg University, Russia

    3 publications · 89 citations

    3

    h-index

  3. DV
    Domenico Vitale

    Università degli Studi della Tuscia, Italy

    3 publications · 89 citations

    3

    h-index

  4. GD
    Giuseppe Diego Puglia

    Istituto per il Sistema Produzione Animale in Ambiente Mediterraneo, Italy

    3 publications · 89 citations

    3

    h-index

  5. AS
    Alaina Shumate

    Johns Hopkins University, United States

    2 publications · 495 citations

    2

    h-index

1–5 of 308

Institutions

128

  1. Institute for Agricultural and Forest Systems in the Mediterranean

    Portici, Italy

    3 h-index

    6 publications

    178 citations

  2. St Petersburg University

    Saint Petersburg, Russia

    3 h-index

    12 publications

    343 citations

  3. Istituto per il Sistema Produzione Animale in Ambiente Mediterraneo

    Naples, Italy

    3 h-index

    7 publications

    212 citations

  4. University of Central Florida

    Orlando, United States

    2 h-index

    8 publications

    284 citations

  5. Justus-Liebig-Universität Gießen

    Giessen, Germany

    2 h-index

    2 publications

    276 citations

  6. Ludwig-Maximilians-Universität München

    Munich, Germany

    2 h-index

    2 publications

    71 citations

  7. Michigan State University

    East Lansing, United States

    2 h-index

    7 publications

    387 citations

  8. Zhejiang University

    Hangzhou, China

    2 h-index

    6 publications

    402 citations

1–8 of 128

Venues

  1. PLoS ONE

    8 publications · 417 citations

    8

    h-index

  2. BMC Genomics

    6 publications · 308 citations

    6

    h-index

  3. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 3 publications · 44 citations

    3

    h-index

  4. Plant and Cell Physiology

    PCP · 2 publications · 141 citations

    2

    h-index

  5. BMC Bioinformatics

    2 publications · 119 citations

    2

    h-index

1–5