Concepedia

Hash-based Alignment

Hash-Based Alignment is a read mapping method that uses hash tables to index reference sequences and enable efficient alignment of sequencing reads by exact or inexact k-mer matching.

24

Publications

16.2K

Citations

85

Authors

39

Institutions

Publications per year

2017–2026

6

Parents

Publications

24

Fast and accurate long-read alignment with Burrows–Wheeler transform

Heng Li, Richard Durbin · Bioinformatics · 2010 · 12.9K citations · Full text

, , +16

Assembling large genomes with single-molecule sequencing and locality-sensitive hashing

Konstantin Berlin, Sergey Koren, Chen-Shan Chin et al. · Nature Biotechnology · 2015 · 1K citations

, , +13

SSAHA: A Fast Search Method for Large DNA Databases

Zemin Ning, Anthony J. Cox, James C. Mullikin · Genome Research · 2001 · 971 citations · Full text

, , +17

MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping

Wan-Ping Lee, Michael P. Strömberg, Alistair Ward et al. · PLoS ONE · 2014 · 291 citations · Full text

, , +13

Benchmarking short sequence mapping tools

Ayat Hatem, Doruk Bozdağ, Amanda E. Toland et al. · BMC Bioinformatics · 2013 · 235 citations · Full text

, , +17

1–5 of 24

Authors

85

  1. AT
    Allison Terrell

    University of Wisconsin–Madison, United States

    2 publications · 62 citations

    2

    h-index

  2. JM
    Jignesh M. Patel

    University of Wisconsin–Madison, United States

    2 publications · 62 citations

    2

    h-index

  3. YL
    Yinan Li

    University of Wisconsin–Madison, United States

    2 publications · 62 citations

    2

    h-index

  4. SS
    Scott Shenker

    University of California, Berkeley, United States

    1 publications · 231 citations

    1

    h-index

  5. RL
    Robert Lindner

    Medizinische Hochschule Hannover, Germany

    1 publications · 72 citations

    1

    h-index

1–5 of 85

Institutions

39

  1. Wellcome Sanger Institute

    Cambridge, United Kingdom

    2 h-index

    5 publications

    28.7K citations

  2. Stanford University

    Stanford, United States

    2 h-index

    5 publications

    182 citations

  3. University of Wisconsin–Madison

    Madison, United States

    2 h-index

    6 publications

    186 citations

  4. Massachusetts Institute of Technology

    Cambridge, United States

    1 h-index

    1 publications

    291 citations

  5. Université de Rouen Normandie

    Rouen, France

    1 h-index

    1 publications

    31 citations

  6. Essen University Hospital

    Essen, Germany

    1 h-index

    1 publications

    33 citations

  7. King Abdullah University of Science and Technology

    Jeddah, Saudi Arabia

    1 h-index

    4 publications

    56 citations

  8. University of Virginia

    Charlottesville, United States

    1 h-index

    2 publications

    172 citations

1–8 of 39

Venues

  1. Bioinformatics

    7 publications · 13.1K citations

    7

    h-index

  2. PLoS ONE

    4 publications · 395 citations

    4

    h-index

  3. BMC Bioinformatics

    2 publications · 259 citations

    2

    h-index

  4. ACM Transactions on Database Systems

    TODS · 1 publications · 23 citations

    1

    h-index

  5. Patterns

    1 publications · 25 citations

    1

    h-index

1–5