Concepedia

Graph-based Pathway Inference

Graph-Based Pathway Inference is a computational method that belongs to the class of pathway analysis techniques, distinguished by its use of graph-theoretical models to reconstruct or infer biological pathways from molecular interaction data based on network topology and connectivity patterns.

13

Publications

468

Citations

62

Authors

36

Institutions

Publications per year

2017–2026

2

Parents

Publications

13

Inferring Signaling Pathway Topologies from Multiple Perturbation Measurements of Specific Biochemical Species

Tian‐Rui Xu, Vladislav Vyshemirsky, Amélie Gormand et al. · Science Signaling · 2010 · 123 citations · Full text

, , +17

Metabolic PathFinding: inferring relevant pathways in biochemical networks

Didier Croes, F. Couche, Shoshana J. Wodak et al. · Nucleic Acids Research · 2005 · 90 citations · Full text

, , +16

A Novel Method for Signal Transduction Network Inference from Indirect Experimental Evidence

Réka Albert, Bhaskar DasGupta, Riccardo Dondi et al. · Journal of Computational Biology · 2007 · 58 citations

, , +17

A single source <i>k</i>-shortest paths algorithm to infer regulatory pathways in a gene network

Yu-Keng Shih, Srinivasan Parthasarathy · Bioinformatics · 2012 · 40 citations · Full text

, , +13

Inferring hidden causal relations between pathway members using reduced Google matrix of directed biological networks

José Lages, Dima L. Shepelyansky, Andreï Zinovyev · PLoS ONE · 2018 · 33 citations · Full text

, , +15

1–5 of 13

Authors

62

  1. DK
    Dominic Ketley

    Cancer Research UK Scotland Institute, United Kingdom

    1 publications · 123 citations

    1

    h-index

  2. GS
    George S. Baillie

    University of Glasgow, United Kingdom

    1 publications · 123 citations

    1

    h-index

  3. ED
    Eduardo D. Sontag

    Rutgers, The State University of New Jersey, United States

    1 publications · 58 citations

    1

    h-index

  4. YL
    Yu‐Chuan Lin

    National Cheng Kung University, Taiwan

    1 publications · 11 citations

    1

    h-index

  5. TZ
    Thomas Zichner

    European Molecular Biology Laboratory, Germany

    1 publications · 19 citations

    1

    h-index

1–5 of 62

Institutions

36

  1. Université Toulouse III - Paul Sabatier

    Toulouse, France

    1 h-index

    1 publications

    33 citations

  2. Texas A&M University

    College Station, United States

    1 h-index

    4 publications

    48 citations

  3. University of Bologna

    Bologna, Italy

    1 h-index

    3 publications

    60 citations

  4. Nara Institute of Science and Technology

    Ikoma, Japan

    1 h-index

    2 publications

    32 citations

  5. Computational Physics (United States)

    Springfield, United States

    1 h-index

    1 publications

    20 citations

  6. Institut Curie

    Paris, France

    1 h-index

    1 publications

    33 citations

  7. Rutgers, The State University of New Jersey

    New Brunswick, United States

    1 h-index

    1 publications

    58 citations

  8. Universiti Malaysia Terengganu

    Kuala Terengganu, Malaysia

    1 h-index

    1 publications

    16 citations

1–8 of 36

Venues

  1. Bioinformatics

    2 publications · 59 citations

    2

    h-index

  2. Science Signaling

    1 publications · 123 citations

    1

    h-index

  3. Computers & Chemical Engineering

    1 publications · 11 citations

    1

    h-index

  4. Nucleic Acids Research

    1 publications · 90 citations

    1

    h-index

  5. Algorithmica

    1 publications · 12 citations

    1

    h-index

1–5