Concepedia

Genome Reconstruction

Genome Reconstruction is a computational method in metagenomics that belongs to the class of genome assembly techniques and is distinguished by its specific aim of inferring complete or near-complete genomic sequences of individual organisms from complex, mixed-species shotgun metagenomic sequencing data through the integration of long-read sequencing technologies and advanced assembly algorithms.

390

Publications

43.1K

Citations

2.4K

Authors

819

Institutions

Publications per year

2017–2026

175

Parents

Publications

390

MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies

Dongwan Kang, Feng Li, Edward Kirton et al. · PeerJ · 2019 · 3.9K citations · Full text

, , +15

dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication

Matthew R. Olm, Christopher T. Brown, Brandon Brooks et al. · The ISME Journal · 2017 · 3.2K citations · Full text

, , +14

A protocol for generating a high-quality genome-scale metabolic reconstruction

Ines Thiele, Bernhard Ø. Palsson · Nature Protocols · 2010 · 1.9K citations · Full text

, , +11

Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes

Mathieu Almeida, Agnieszka Sierakowska Juncker, Simon Rasmussen et al. · Nature Biotechnology · 2014 · 1.3K citations

, , +16

Genome-Scale Reconstruction of the <i>Saccharomyces cerevisiae</i> Metabolic Network

Jochen Förster, Iman Famili, Patrick Fu et al. · Genome Research · 2003 · 1.1K citations · Full text

, , +16

1–5 of 390

Authors

2.4K

  1. BØ
    Bernhard Ø. Palsson

    University of California San Diego, United States

    22 publications · 6.8K citations

    21

    h-index

  2. IT
    Ines Thiele

    University of Luxembourg, Luxembourg

    8 publications · 3K citations

    8

    h-index

  3. CD
    Costas D. Maranas

    Pennsylvania State University, United States

    6 publications · 576 citations

    6

    h-index

  4. TZ
    Tong Zhang

    University of Hong Kong, Hong Kong SAR China

    6 publications · 396 citations

    6

    h-index

  5. LK
    Lars K. Nielsen

    The University of Queensland, Australia

    6 publications · 1.3K citations

    6

    h-index

1–5 of 2.4K

Institutions

819

  1. University of California San Diego

    San Diego, United States

    28 h-index

    116 publications

    26.7K citations

  2. Centre National de la Recherche Scientifique

    Paris, France

    17 h-index

    101 publications

    15.1K citations

  3. Pennsylvania State University

    State College, United States

    11 h-index

    38 publications

    10.2K citations

  4. La Jolla Bioengineering Institute

    San Diego, United States

    11 h-index

    26 publications

    8.2K citations

  5. The University of Queensland

    Brisbane, Australia

    9 h-index

    30 publications

    5.8K citations

  6. Technical University of Denmark

    Kongens Lyngby, Denmark

    9 h-index

    42 publications

    30.5K citations

  7. Chinese Academy of Sciences

    Beijing, China

    9 h-index

    17 publications

    1.4K citations

  8. Ludwig-Maximilians-Universität München

    Munich, Germany

    7 h-index

    16 publications

    854 citations

1–8 of 819

Venues

  1. BMC Genomics

    20 publications · 1.7K citations

    18

    h-index

  2. Scientific Reports

    18 publications · 1.8K citations

    17

    h-index

  3. PLoS ONE

    17 publications · 1.8K citations

    16

    h-index

  4. BMC Bioinformatics

    16 publications · 1.1K citations

    15

    h-index

  5. Bioinformatics

    15 publications · 1.1K citations

    13

    h-index

1–5