Concepedia

Gap Penalty Learning

Gap Penalty Learning is a computational method in sequence alignment algorithms that systematically infers optimal gap penalty parameters by learning from biological or artificial sequence data to distinguish homologous from non-homologous alignments.

12

Publications

836

Citations

28

Authors

19

Institutions

Publications per year

2017–2026

2

Parents

Publications

12

Optimal sequence alignment using affine gap costs

Stephen F. Altschul, Bruce W. Erickson · Bulletin of Mathematical Biology · 1986 · 232 citations

, , +9

Gappy data: To Krig or not to Krig?

Hasan Güneş, Sirod Sirisup, George Em Karniadakis · Journal of Computational Physics · 2005 · 156 citations

, , +10

Gap costs for multiple sequence alignment

Stephen F. Altschul · Journal of Theoretical Biology · 1989 · 140 citations

, , +9

Optimal sequence alignment using affine gap costs

Stephen F. Altschul, B ERICKSON · Bulletin of Mathematical Biology · 1986 · 64 citations

, , +9

Multiple sequence alignment with affine gap by using multi-objective genetic algorithm

Mehmet Kaya, Abdullah Sarhan, Reda Alhajj · Computer Methods and Programs in Biomedicine · 2014 · 55 citations

, , +10

1–5 of 12

Authors

28

  1. SF
    Stephen F. Altschul

    National Institutes of Health, United States

    3 publications · 436 citations

    3

    h-index

  2. ML
    Michael L. Fredman

    University of California San Diego, United States

    2 publications · 71 citations

    2

    h-index

  3. JK
    John Kececioglu

    University of Arizona, United States

    2 publications · 38 citations

    2

    h-index

  4. SW
    Sven Warris

    Wageningen University & Research, Netherlands

    1 publications · 18 citations

    1

    h-index

  5. HG
    Hasan Güneş

    Istanbul Technical University, Türkiye

    1 publications · 156 citations

    1

    h-index

1–5 of 28

Institutions

19

  1. University of Arizona

    Tucson, United States

    2 h-index

    4 publications

    76 citations

  2. University of California San Diego

    San Diego, United States

    2 h-index

    2 publications

    71 citations

  3. Department of Genomes & Genetics

    Paris, France

    1 h-index

    1 publications

    39 citations

  4. Mininglamp (China)

    Beijing, China

    1 h-index

    1 publications

    23 citations

  5. Hanze University of Applied Sciences

    Groningen, The Netherlands

    1 h-index

    4 publications

    72 citations

  6. Wageningen University & Research

    Wageningen, The Netherlands

    1 h-index

    3 publications

    54 citations

  7. Massachusetts Institute of Technology

    Cambridge, United States

    1 h-index

    1 publications

    232 citations

  8. Institut Pasteur

    Paris, France

    1 h-index

    1 publications

    39 citations

1–8 of 19

Venues

  1. Bulletin of Mathematical Biology

    4 publications · 367 citations

    4

    h-index

  2. 2

    h-index

  3. Computer Methods and Programs in Biomedicine

    1 publications · 55 citations

    1

    h-index

  4. Journal of Theoretical Biology

    1 publications · 140 citations

    1

    h-index

  5. PLoS ONE

    1 publications · 18 citations

    1

    h-index

1–5