Concepedia

Gap Cost Function

A Gap Cost Function is a mathematical function that quantifies the penalty assigned to gaps in sequence alignments, distinguished by its specific formulation to model the biological or algorithmic cost of insertions or deletions relative to the length and placement of the gap.

32

Publications

18.3K

Citations

79

Authors

54

Institutions

Publications per year

2017–2026

9

Variants

Gap Penalty Function

Parents

Publications

32

Minimap2: pairwise alignment for nucleotide sequences

Heng Li · Bioinformatics · 2018 · 16.8K citations · Full text

, , +17

miR-192 Mediates TGF-β/Smad3-Driven Renal Fibrosis

Arthur C.K. Chung, Xiao Ru Huang, Xiao‐Ming Meng et al. · Journal of the American Society of Nephrology · 2010 · 360 citations · Full text

, , +10

Gap Functions for Equilibrium Problems

Giandomenico Mastroeni · Journal of Global Optimization · 2003 · 216 citations

, , +10

lra: A long read aligner for sequences and contigs

Jingwen Ren, Mark Chaisson · PLoS Computational Biology · 2021 · 128 citations · Full text

, , +17

Exploring the Behavior of POY, a Program for Direct Optimization of Molecular Data

Gonzalo Giribet · Cladistics · 2001 · 93 citations · Full text

, , +17

1–5 of 32

Authors

79

  1. HL
    Heng Li

    Harvard University, United States

    2 publications · 16.9K citations

    2

    h-index

  2. GG
    Gonzalo Giribet

    Harvard University, United States

    2 publications · 173 citations

    2

    h-index

  3. GZ
    Guangzhao Zhang

    South China University of Technology, China

    1 publications · 14 citations

    1

    h-index

  4. XG
    Xiangjun Gong

    South China University of Technology, China

    1 publications · 14 citations

    1

    h-index

  5. MI
    Masato Ishikawa

    Kyoto University, Japan

    1 publications · 15 citations

    1

    h-index

1–5 of 79

Institutions

54

  1. Stanford University

    Stanford, United States

    2 h-index

    4 publications

    164 citations

  2. Harvard University

    Cambridge, United States

    2 h-index

    2 publications

    173 citations

  3. University of Copenhagen

    Copenhagen, Denmark

    2 h-index

    3 publications

    147 citations

  4. Indian Statistical Institute

    Kolkata, India

    1 h-index

    1 publications

    10 citations

  5. University of Vienna

    Vienna, Austria

    1 h-index

    1 publications

    25 citations

  6. Science for Life Laboratory

    Stockholm, Sweden

    1 h-index

    1 publications

    19 citations

  7. University of Science and Technology of China

    Hefei, China

    1 h-index

    3 publications

    42 citations

  8. Santa Fe Institute

    Santa Fe, United States

    1 h-index

    1 publications

    25 citations

1–8 of 54

Venues

  1. Cladistics

    4 publications · 246 citations

    4

    h-index

  2. Journal of Global Optimization

    1 publications · 11 citations

    2

    h-index

  3. Journal of Computational Biology

    2 publications · 37 citations

    2

    h-index

  4. PubMed

    Repository · 2 publications · 26 citations

    2

    h-index

  5. BRICS Report Series

    1 publications · 10 citations

    1

    h-index

1–5