Concepedia

Full-length Transcript Reconstruction

Full-Length Transcript Reconstruction is a computational method in transcriptome assembly that specifically aims to accurately reconstruct complete transcript sequences from sequencing data by identifying exact start and end sites of transcription, thereby distinguishing itself from partial or fragmented transcript inference approaches.

46

Publications

50.1K

Citations

320

Authors

156

Institutions

Publications per year

2017–2026

24

Parents

Publications

46

Full-length transcriptome assembly from RNA-Seq data without a reference genome

Manfred Grabherr, Brian J. Haas, Moran Yassour et al. · Nature Biotechnology · 2011 · 22.6K citations · Full text

, , +13

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

Mihaela Pertea, Geo Pertea, Corina Antonescu et al. · Nature Biotechnology · 2015 · 15.5K citations · Full text

, , +10

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

Brian J. Haas, Alexie Papanicolaou, Moran Yassour et al. · Nature Protocols · 2013 · 9.1K citations · Full text

, , +16

A single-molecule long-read survey of the human transcriptome

Donald Sharon, Hagen Tilgner, Fabian Grubert et al. · Nature Biotechnology · 2013 · 787 citations · Full text

, , +9

Rnnotator: an automated <it>de novo </it>transcriptome assembly pipeline from stranded RNA-Seq reads

Tao Zhang, Gavin Sherlock, Zhong Wang · DOAJ (DOAJ: Directory of Open Access Journals) · 2010 · 219 citations · Full text

, , +14

1–5 of 46

Authors

320

  1. MY
    Moran Yassour

    Hebrew University of Jerusalem, Israel

    3 publications · 31.8K citations

    3

    h-index

  2. NF
    Nir Friedman

    Hebrew University of Jerusalem, Israel

    3 publications · 31.8K citations

    3

    h-index

  3. MG
    Manfred Grabherr

    Uppsala University, Sweden

    3 publications · 31.8K citations

    3

    h-index

  4. BJ
    Brian J. Haas

    Broad Institute, United States

    3 publications · 31.8K citations

    3

    h-index

  5. AR
    Aviv Regev

    Broad Institute, United States

    2 publications · 31.7K citations

    2

    h-index

1–5 of 320

Institutions

156

  1. Science for Life Laboratory

    Stockholm, Sweden

    3 h-index

    3 publications

    31.9K citations

  2. Pennsylvania State University

    State College, United States

    2 h-index

    2 publications

    196 citations

  3. Uppsala University

    Uppsala, Sweden

    2 h-index

    2 publications

    31.7K citations

  4. Hebrew University of Jerusalem

    Jerusalem, Israel

    2 h-index

    4 publications

    63.5K citations

  5. Tsinghua University

    Beijing, China

    2 h-index

    2 publications

    209 citations

  6. Yale University

    New Haven, United States

    2 h-index

    2 publications

    1K citations

  7. John Radcliffe Hospital

    Oxford, United Kingdom

    2 h-index

    6 publications

    264 citations

  8. Howard Hughes Medical Institute

    Chevy Chase, United States

    2 h-index

    2 publications

    31.7K citations

1–8 of 156

Venues

  1. Nature Biotechnology

    4 publications · 38.9K citations

    4

    h-index

  2. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 3 publications · 106 citations

    3

    h-index

  3. Nature Communications

    3 publications · 258 citations

    3

    h-index

  4. BMC Genomics

    3 publications · 92 citations

    3

    h-index

  5. Genome biology

    3 publications · 92 citations

    3

    h-index

1–5