Concepedia

Docking Pose Clustering

Docking Pose Clustering is a computational method in molecular docking informatics that groups geometrically similar predicted ligand-binding conformations into distinct clusters to identify structurally representative binding modes.

16

Publications

1.3K

Citations

57

Authors

32

Institutions

Publications per year

2017–2026

4

Parents

Publications

16

Structural Interaction Fingerprint (SIFt):  A Novel Method for Analyzing Three-Dimensional Protein−Ligand Binding Interactions

Zhan Deng, Claudio Chuaqui, Juswinder Singh · Journal of Medicinal Chemistry · 2003 · 572 citations

, , +17

Optimal Clustering for Detecting Near-Native Conformations in Protein Docking

Dima Kozakov, Karl H. Clodfelter, Sándor Vajda et al. · Biophysical Journal · 2005 · 134 citations · Full text

, , +15

ConsDock: A new program for the consensus analysis of protein–ligand interactions

Nicodème Paul, Didier Rognan · Proteins Structure Function and Bioinformatics · 2002 · 115 citations

, , +17

Performance of ZDOCK and ZRANK in CAPRI rounds 13–19

Howook Hwang, Thom Vreven, Brian G. Pierce et al. · Proteins Structure Function and Bioinformatics · 2010 · 76 citations

, , +12

Applying Pose Clustering and MD Simulations To Eliminate False Positives in Molecular Docking

Spandana Makeneni, David F. Thieker, Robert J. Woods · Journal of Chemical Information and Modeling · 2018 · 73 citations · Full text

, , +17

1–5 of 16

Authors

57

  1. DR
    Didier Rognan

    Centre National de la Recherche Scientifique, France

    2 publications · 128 citations

    2

    h-index

  2. SF
    Sabiha Fatima

    King Saud University, Saudi Arabia

    1 publications · 14 citations

    1

    h-index

  3. RJ
    Robert J. Woods

    University of Georgia, United States

    1 publications · 73 citations

    1

    h-index

  4. LS
    Lu Sun

    Nanjing Forestry University, China

    1 publications · 11 citations

    1

    h-index

  5. SP
    Shiming Peng

    University of California, San Francisco, United States

    1 publications · 11 citations

    1

    h-index

1–5 of 57

Institutions

32

  1. Centre National de la Recherche Scientifique

    Paris, France

    3 h-index

    10 publications

    566 citations

  2. Boston University

    Boston, United States

    2 h-index

    8 publications

    840 citations

  3. Laboratoire d'Innovation Thérapeutique

    Illkirch-Graffenstaden, France

    1 h-index

    4 publications

    52 citations

  4. Délégation Paris 5

    Paris, France

    1 h-index

    4 publications

    284 citations

  5. University of California San Diego

    San Diego, United States

    1 h-index

    1 publications

    25 citations

  6. Dalian University of Technology

    Dalian, China

    1 h-index

    4 publications

    44 citations

  7. Biogen (United States)

    Cambridge, United States

    1 h-index

    3 publications

    1.7K citations

  8. Universidade Federal do Rio de Janeiro

    Rio de Janeiro, Brazil

    1 h-index

    1 publications

    13 citations

1–8 of 32

Venues

  1. Journal of Chemical Information and Modeling

    JCIM · 3 publications · 187 citations

    3

    h-index

  2. Bioinformatics

    2 publications · 91 citations

    2

    h-index

  3. Proteins Structure Function and Bioinformatics

    2 publications · 191 citations

    2

    h-index

  4. PLoS ONE

    1 publications · 27 citations

    1

    h-index

  5. Biophysical Journal

    1 publications · 134 citations

    1

    h-index

1–5