Concepedia

Data-driven Pathway Reconstruction

Data-Driven Pathway Reconstruction is a computational systems biology approach that reconstructs biological pathways by integrating and analyzing high-throughput experimental data to infer molecular interactions and functional relationships, distinguished from knowledge-based or model-driven methods by its reliance on empirical data as the primary source for pathway inference.

27

Publications

4.3K

Citations

135

Authors

64

Institutions

Publications per year

2017–2026

7

Parents

Publications

27

From genomics to chemical genomics: new developments in KEGG

Minoru Kanehisa · Nucleic Acids Research · 2005 · 3.2K citations · Full text

, , +17

Simultaneous Reconstruction of Multiple Signaling Pathways via the Prize-Collecting Steiner Forest Problem

Nurcan Tunçbağ, Alfredo Braunstein, Andrea Pagnani et al. · Journal of Computational Biology · 2013 · 126 citations · Full text

, , +16

Discovering pathways by orienting edges in protein interaction networks

Anthony Gitter, Judith Klein‐Seetharaman, Anupam Gupta et al. · Nucleic Acids Research · 2010 · 109 citations · Full text

, , +15

Tissue-aware data integration approach for the inference of pathway interactions in metazoan organisms

Christopher Y. Park, Arjun Krishnan, Qian Zhu et al. · Bioinformatics · 2014 · 103 citations · Full text

, , +13

Automatic pathway building in biological association networks

Anton Yuryev, Zufar Mulyukov, Ekaterina Kotelnikova et al. · BMC Bioinformatics · 2006 · 99 citations · Full text

, , +13

1–5 of 27

Authors

135

  1. MK
    Minoru Kanehisa

    Kyoto University, Japan

    2 publications · 3.2K citations

    2

    h-index

  2. AG
    Anthony Gitter

    University of Wisconsin–Madison, United States

    2 publications · 121 citations

    2

    h-index

  3. SC
    Shao‐shan Carol Huang

    Salk Institute for Biological Studies, United States

    2 publications · 200 citations

    2

    h-index

  4. NT
    Nurcan Tunçbağ

    Koç University, Türkiye

    2 publications · 200 citations

    2

    h-index

  5. EF
    Ernest Fraenkel

    Massachusetts Institute of Technology, United States

    2 publications · 200 citations

    2

    h-index

1–5 of 135

Institutions

64

  1. Massachusetts Institute of Technology

    Cambridge, United States

    3 h-index

    9 publications

    704 citations

  2. Stanford University

    Stanford, United States

    2 h-index

    4 publications

    196 citations

  3. Kyoto University

    Kyoto, Japan

    2 h-index

    7 publications

    3.5K citations

  4. Tokyo University of Science

    Tokyo, Japan

    2 h-index

    7 publications

    3.3K citations

  5. Microsoft Research New England (United States)

    Cambridge, United States

    1 h-index

    2 publications

    252 citations

  6. Oak Ridge Associated Universities

    Oak Ridge, United States

    1 h-index

    1 publications

    77 citations

  7. University of Wisconsin–Madison

    Madison, United States

    1 h-index

    2 publications

    24 citations

  8. Microsoft (United States)

    Redmond, United States

    1 h-index

    2 publications

    252 citations

1–8 of 64

Venues

  1. BMC Bioinformatics

    4 publications · 192 citations

    4

    h-index

  2. PubMed

    Repository · 4 publications · 142 citations

    4

    h-index

  3. Nucleic Acids Research

    3 publications · 3.4K citations

    3

    h-index

  4. BMC Systems Biology

    2 publications · 60 citations

    2

    h-index

  5. Bioinformatics

    2 publications · 120 citations

    2

    h-index

1–5