Concepedia

Condition-specific Metabolic Modeling

Condition-Specific Metabolic Modeling is a genome-scale metabolic modeling approach that refines a generic metabolic network into a context-specific instance by integrating omics data and physiological constraints to accurately represent metabolic behavior under defined environmental or cellular conditions.

15

Publications

741

Citations

53

Authors

31

Institutions

Publications per year

2017–2026

9

Variants

Context-specific Metabolic Modeling

Parents

Publications

15

GIM3E: condition-specific models of cellular metabolism developed from metabolomics and expression data

Brian J. Schmidt, Ali Ebrahim, Thomas Metz et al. · Bioinformatics · 2013 · 136 citations · Full text

, , +17

Using metabolic flux data to further constrain the metabolic solution space and predict internal flux patterns: the <i>Escherichia coli</i> spectrum

Sharon J. Wiback, Radhakrishnan Mahadevan, Bernhard Ø. Palsson · Biotechnology and Bioengineering · 2004 · 90 citations

, , +17

Metatranscriptomics-guided genome-scale metabolic modeling of microbial communities

Guido Zampieri, Stefano Campanaro, Claudio Angione et al. · Cell Reports Methods · 2023 · 75 citations · Full text

, , +16

E-Flux2 and SPOT: Validated Methods for Inferring Intracellular Metabolic Flux Distributions from Transcriptomic Data

Min Kyung Kim, Anatoliy Lane, James J. Kelley et al. · PLoS ONE · 2016 · 75 citations · Full text

, , +14

Predicting the impact of diet and enzymopathies on human small intestinal epithelial cells

Swagatika Sahoo, Ines Thiele · Human Molecular Genetics · 2013 · 74 citations · Full text

, , +17

1–5 of 15

Authors

53

  1. BØ
    Bernhard Ø. Palsson

    University of California San Diego, United States

    2 publications · 226 citations

    2

    h-index

  2. CA
    Claudio Angione

    Teesside University, United Kingdom

    2 publications · 103 citations

    2

    h-index

  3. VP
    Vikash Pandey

    École Polytechnique Fédérale de Lausanne, Switzerland

    1 publications · 19 citations

    1

    h-index

  4. JJ
    James J. Kelley

    Rutgers, The State University of New Jersey, United States

    1 publications · 75 citations

    1

    h-index

  5. IT
    Ines Thiele

    University of Luxembourg, Luxembourg

    1 publications · 74 citations

    1

    h-index

1–5 of 53

Institutions

31

  1. University of California San Diego

    San Diego, United States

    2 h-index

    9 publications

    1.1K citations

  2. Teesside University

    Middlesbrough, United Kingdom

    2 h-index

    3 publications

    131 citations

  3. Institute for Biomedical Engineering

    Zurich, Switzerland

    1 h-index

    1 publications

    38 citations

  4. Amgen (United States)

    Thousand Oaks, United States

    1 h-index

    4 publications

    60 citations

  5. Zhejiang University

    Hangzhou, China

    1 h-index

    1 publications

    34 citations

  6. Genomatica (United States)

    San Diego, United States

    1 h-index

    1 publications

    90 citations

  7. Bioengineering (Switzerland)

    Wald, Switzerland

    1 h-index

    1 publications

    38 citations

  8. Pacific Northwest National Laboratory

    Richland, United States

    1 h-index

    6 publications

    816 citations

1–8 of 31

Venues

  1. PLoS Computational Biology

    2 publications · 106 citations

    2

    h-index

  2. Scientific Reports

    1 publications · 15 citations

    1

    h-index

  3. Bioinformatics

    1 publications · 136 citations

    1

    h-index

  4. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 1 publications · 19 citations

    1

    h-index

  5. Metabolites

    1 publications · 22 citations

    1

    h-index

1–5