Concepedia

Computational Pathway Modeling

Computational Pathway Modeling is a computational framework that formally represents and simulates biological pathways by integrating molecular interactions and regulatory mechanisms to predict dynamic cellular behaviors under specific physiological or experimental conditions.

144

Publications

10.1K

Citations

608

Authors

277

Institutions

Publications per year

2017–2026

30

Parents

Publications

144

COPASI—a COmplex PAthway SImulator

Stefan Hoops, Sven Sahle, Ralph Gauges et al. · Bioinformatics · 2006 · 2.7K citations · Full text

, , +14

Cell-free chemoenzymatic starch synthesis from carbon dioxide

Tao Cai, Hongbing Sun, Jing Qiao et al. · Science · 2021 · 605 citations

, , +17

Biochemistry by numbers: simulation of biochemical pathways with Gepasi 3

Pedro Mendes · Trends in Biochemical Sciences · 1997 · 574 citations

, , +6

Computational prediction of human metabolic pathways from the complete human genome

Pedro Romero, Jonathan Wagg, Michelle Green et al. · Genome biology · 2004 · 535 citations · Full text

, , +17

Computation with the KEGG pathway database

Hiroyuki Ogata, Susumu Goto, Wataru Fujibuchi et al. · Biosystems · 1998 · 322 citations

, , +12

1–5 of 144

Authors

608

  1. CT
    Carolyn Talcott

    SRI International, United States

    6 publications · 211 citations

    6

    h-index

  2. PM
    Pedro Mendes

    Virginia Tech, United States

    5 publications · 3.5K citations

    5

    h-index

  3. MK
    Merrill Knapp

    SRI International, United States

    5 publications · 193 citations

    5

    h-index

  4. SM
    Satoru Miyano

    The University of Tokyo, Japan

    4 publications · 104 citations

    4

    h-index

  5. JS
    Julio Sáez-Rodríguez

    Heidelberg University, Germany

    4 publications · 269 citations

    4

    h-index

1–5 of 608

Institutions

277

  1. Massachusetts Institute of Technology

    Cambridge, United States

    9 h-index

    19 publications

    1.3K citations

  2. SRI International

    Menlo Park, United States

    8 h-index

    28 publications

    3.8K citations

  3. European Bioinformatics Institute

    Cambridge, United Kingdom

    6 h-index

    23 publications

    2.7K citations

  4. Virginia Tech

    Blacksburg, United States

    5 h-index

    16 publications

    14.1K citations

  5. University of Trento

    Trento, Italy

    4 h-index

    8 publications

    455 citations

  6. University of Rostock

    Rostock, Germany

    4 h-index

    15 publications

    580 citations

  7. University of Edinburgh

    Edinburgh, United Kingdom

    4 h-index

    22 publications

    865 citations

  8. Wellcome Trust

    London, United Kingdom

    4 h-index

    20 publications

    2.4K citations

1–8 of 277

Venues

  1. Bioinformatics

    12 publications · 3.2K citations

    12

    h-index

  2. PLoS ONE

    9 publications · 223 citations

    9

    h-index

  3. BMC Systems Biology

    8 publications · 461 citations

    8

    h-index

  4. PLoS Computational Biology

    5 publications · 163 citations

    5

    h-index

  5. Molecular BioSystems

    4 publications · 321 citations

    4

    h-index

1–5