Concepedia

Computational Isoform Expression Modeling

Computational Isoform Expression Modeling is a computational framework that quantitatively predicts or infers the expression levels of alternatively spliced transcript isoforms from high-throughput sequencing data by integrating statistical models, algorithmic inference, and genomic annotations to resolve isoform-level transcriptional activity.

37

Publications

3.6K

Citations

149

Authors

70

Institutions

Publications per year

2017–2026

12

Parents

Publications

37

RNA-Seq gene expression estimation with read mapping uncertainty

Bo Li, Victor Ruotti, Ron Stewart et al. · Bioinformatics · 2009 · 1.3K citations · Full text

, , +11

Statistical inferences for isoform expression in RNA-Seq

Hui Jiang, Wing Hung Wong · Bioinformatics · 2009 · 482 citations · Full text

, , +15

Evaluation and comparison of computational tools for RNA-seq isoform quantification

Chi Zhang, Baohong Zhang, Lih‐Ling Lin et al. · BMC Genomics · 2017 · 209 citations · Full text

, , +15

Estimation of alternative splicing isoform frequencies from RNA-Seq data

Marius Nicolae, Serghei Mangul, Ion Măndoiu et al. · Algorithms for Molecular Biology · 2011 · 195 citations · Full text

, , +16

Comparative assessment of methods for the computational inference of transcript isoform abundance from RNA-seq data

Alexander Kanitz, Foivos Gypas, Andreas Gruber et al. · Genome Biology · 2015 · 155 citations · Full text

, , +16

1–5 of 37

Authors

149

  1. TJ
    Tao Jiang

    University of California, Riverside, United States

    3 publications · 164 citations

    3

    h-index

  2. CN
    Colin N. Dewey

    University of Wisconsin–Madison, United States

    2 publications · 1.4K citations

    2

    h-index

  3. YP
    Yudi Pawitan

    Karolinska Institutet, Sweden

    2 publications · 36 citations

    2

    h-index

  4. RS
    Ron Stewart

    Morgridge Institute for Research, United States

    2 publications · 1.4K citations

    2

    h-index

  5. CC
    Chung-Che Chang

    Methodist Hospital, United States

    2 publications · 47 citations

    2

    h-index

1–5 of 149

Institutions

70

  1. Tsinghua University

    Beijing, China

    5 h-index

    9 publications

    551 citations

  2. University of Pennsylvania

    Philadelphia, United States

    4 h-index

    21 publications

    711 citations

  3. University of California, Riverside

    Riverside, United States

    3 h-index

    8 publications

    406 citations

  4. Houston Methodist

    Houston, United States

    2 h-index

    5 publications

    146 citations

  5. Karolinska Institutet

    Stockholm, Sweden

    2 h-index

    8 publications

    144 citations

  6. Chinese Academy of Sciences

    Beijing, China

    2 h-index

    6 publications

    230 citations

  7. University of Wisconsin–Madison

    Madison, United States

    2 h-index

    10 publications

    7K citations

  8. Morgridge Institute for Research

    Madison, United States

    2 h-index

    12 publications

    7.2K citations

1–8 of 70

Venues

  1. Bioinformatics

    12 publications · 2.2K citations

    11

    h-index

  2. BMC Bioinformatics

    5 publications · 176 citations

    5

    h-index

  3. BMC Genomics

    3 publications · 312 citations

    3

    h-index

  4. Nucleic Acids Research

    2 publications · 97 citations

    2

    h-index

  5. Cell Systems

    1 publications · 10 citations

    1

    h-index

1–5