Concepedia

Computational Footprinting

Computational Footprinting is a bioinformatics method that identifies transcription factor binding sites by analyzing patterns of DNase I hypersensitivity or chromatin accessibility across the genome to infer regulatory elements.

21

Publications

2.4K

Citations

116

Authors

46

Institutions

Publications per year

2017–2026

9

Variants

Digital Genomic Footprinting

Parents

Publications

21

ATAC-seq footprinting unravels kinetics of transcription factor binding during zygotic genome activation

Mette Bentsen, Philipp Goymann, Hendrik Schultheis et al. · Nature Communications · 2020 · 750 citations · Full text

, , +11

Identification of transcription factor binding sites using ATAC-seq

Zhijian Li, Marcel H. Schulz, Thomas Look et al. · Genome biology · 2019 · 511 citations · Full text

, , +17

SAFA: Semi-automated footprinting analysis software for high-throughput quantification of nucleic acid footprinting experiments

Rhiju Das, Alain Laederach, Samuel M. Pearlman et al. · RNA · 2005 · 317 citations · Full text

, , +12

Analysis of computational footprinting methods for DNase sequencing experiments

Eduardo Gade Gusmao, Manuel Allhoff, Martin Zenke et al. · Nature Methods · 2016 · 176 citations

, , +8

ChIP-exo signal associated with DNA-binding motifs provides insight into the genomic binding of the glucocorticoid receptor and cooperating transcription factors

Stephan R. Starick, Jonas Ibn-Salem, Marcel Jurk et al. · Genome Research · 2015 · 125 citations · Full text

, , +17

1–5 of 21

Authors

116

  1. MZ
    Martin Zenke

    RWTH Aachen University, Germany

    3 publications · 741 citations

    3

    h-index

  2. IG
    Ivan G. Costa

    RWTH Aachen University, Germany

    3 publications · 741 citations

    3

    h-index

  3. ZL
    Zhijian Li

    University of Toronto, Canada

    2 publications · 565 citations

    2

    h-index

  4. MH
    Marcel H. Schulz

    Goethe University Frankfurt, Germany

    2 publications · 565 citations

    2

    h-index

  5. BF
    Blair F. Johnston

    University of Strathclyde, United Kingdom

    1 publications · 13 citations

    1

    h-index

1–5 of 116

Institutions

46

  1. RWTH Aachen University

    Aachen, Germany

    3 h-index

    12 publications

    3.4K citations

  2. Institute for Advanced Study

    Berlin, Germany

    2 h-index

    3 publications

    406 citations

  3. German Centre for Cardiovascular Research

    Berlin, Germany

    2 h-index

    5 publications

    3.5K citations

  4. Saarland University

    Saarbrücken, Germany

    2 h-index

    2 publications

    565 citations

  5. Max Planck Institute for Informatics

    Saarbrücken, Germany

    2 h-index

    2 publications

    565 citations

  6. Health Data Research UK

    London, United Kingdom

    1 h-index

    2 publications

    216 citations

  7. University of Cambridge

    Cambridge, United Kingdom

    1 h-index

    3 publications

    324 citations

  8. Inserm

    Paris, France

    1 h-index

    1 publications

    125 citations

1–8 of 46

Venues

  1. Bioinformatics

    3 publications · 109 citations

    3

    h-index

  2. Genome Research

    GR · 3 publications · 188 citations

    3

    h-index

  3. Nature Methods

    2 publications · 189 citations

    2

    h-index

  4. Nature Communications

    2 publications · 775 citations

    2

    h-index

  5. Proceedings of the National Academy of Sciences

    PNAS · 1 publications · 52 citations

    1

    h-index

1–5