Samuel M. Pearlman

Coarse-grained modeling of large RNA molecules with knowledge-based potentials and structural filters

Magdalena Jonikas, Randall J. Radmer, Alain Laederach et al. · RNA · 2009 · 323 citations · Full text

SAFA: Semi-automated footprinting analysis software for high-throughput quantification of nucleic acid footprinting experiments

Rhiju Das, Alain Laederach, Samuel M. Pearlman et al. · RNA · 2005 · 316 citations · Full text

A Mechanism for the Evolution of Phosphorylation Sites

Samuel M. Pearlman, Zach Serber, James E. Ferrell · Cell · 2011 · 266 citations · Full text

Signal Transduction, Molecular Pathway, Natural Sciences +9

TagGraph reveals vast protein modification landscapes from large tandem mass spectrometry datasets

Arun Devabhaktuni, Sarah Lin, Lichao Zhang et al. · Nature Biotechnology · 2019 · 158 citations

Functional Genomics, Biochemistry, Interactomics +10

Semiautomated and rapid quantification of nucleic acid footprinting and structure mapping experiments

Alain Laederach, Rhiju Das, Quentin Vicens et al. · Nature Protocols · 2008 · 72 citations · Full text

Nucleic Acid Footprinting, Chromatin, Nucleic Acid Chemistry +15