Concepedia

Chimeric Assembly Detection

Chimeric Assembly Detection is a computational method that identifies artificial sequences in genome assemblies resulting from erroneous joins of non-contiguous genomic regions during the assembly process.

13

Publications

783

Citations

43

Authors

33

Institutions

Publications per year

2017–2026

7

Parents

Publications

13

GUNC: detection of chimerism and contamination in prokaryotic genomes

Askarbek Orakov, Anthony Fullam, Luís Pedro Coelho et al. · Genome biology · 2021 · 317 citations · Full text

, , +17

Black Box Chimera Check (B2C2): a Windows-Based Software for Batch Depletion of Chimeras from Bacterial 16S rRNA Gene Datasets

Viktoria Gontcharova · The Open Microbiology Journal · 2010 · 170 citations · Full text

, , +11

yacrd and fpa: upstream tools for long-read genome assembly

Pierre Marijon, Rayan Chikhi, Jean‐Stéphane Varré · Bioinformatics · 2020 · 90 citations

, , +17

EBARDenovo: highly accurate <i>de novo</i> assembly of RNA-Seq with efficient chimera-detection

Hsueh‐Ting Chu, William Hsiao, Jen‐Chih Chen et al. · Bioinformatics · 2013 · 34 citations

, , +17

Accurate detection of chimeric contigs via Bionano optical maps

Weihua Pan, Stefano Lonardi · Bioinformatics · 2018 · 27 citations · Full text

, , +16

1–5 of 13

Authors

43

  1. TS
    Thomas Schmidt

    University of Zurich, Switzerland

    2 publications · 344 citations

    2

    h-index

  2. DS
    Damian Szklarczyk

    SIB Swiss Institute of Bioinformatics, Switzerland

    2 publications · 344 citations

    2

    h-index

  3. PM
    Pierre Marijon

    Heinrich Heine University Düsseldorf, Germany

    2 publications · 101 citations

    2

    h-index

  4. SK
    Supriya Khedkar

    Max Delbrück Center, Germany

    2 publications · 344 citations

    2

    h-index

  5. AF
    Anthony Fullam

    European Molecular Biology Laboratory, Germany

    2 publications · 344 citations

    2

    h-index

1–5 of 43

Institutions

33

  1. Institut Pasteur

    Paris, France

    2 h-index

    2 publications

    101 citations

  2. European Molecular Biology Laboratory

    Heidelberg, Germany

    2 h-index

    3 publications

    661 citations

  3. Amsterdam University Medical Centers

    Amsterdam, The Netherlands

    2 h-index

    2 publications

    344 citations

  4. Max Delbrück Center

    Berlin, Germany

    2 h-index

    2 publications

    344 citations

  5. Shanghai Institute for Science of Science

    Xuhui, China

    2 h-index

    2 publications

    344 citations

  6. European Molecular Biology Laboratory

    Hamburg, Germany

    2 h-index

    10 publications

    1.7K citations

  7. Université de Lille

    Lille, France

    2 h-index

    4 publications

    202 citations

  8. École Centrale de Lille

    Villeneuve-d'Ascq, France

    2 h-index

    4 publications

    202 citations

1–8 of 33

Venues

  1. Bioinformatics

    3 publications · 151 citations

    3

    h-index

  2. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 2 publications · 38 citations

    2

    h-index

  3. BMC Bioinformatics

    2 publications · 49 citations

    2

    h-index

  4. Computers & Chemistry

    1 publications · 11 citations

    1

    h-index

  5. PLoS ONE

    1 publications · 24 citations

    1

    h-index

1–5