GUNC: detection of chimerism and contamination in prokaryotic genomes

Askarbek Orakov, Anthony Fullam, Luís Pedro Coelho, +5

Genome biology

A faecal microbiota signature with high specificity for pancreatic cancer

Ece Kartal, Thomas Schmidt, Esther Molina‐Montes, +25

Gut

Towards the biogeography of prokaryotic genes

Luís Pedro Coelho, Renato Alves, Álvaro Rodríguez del Río, +20

Nature

BiologyProkaryotic SystemMedicineNatural SciencesProkaryotic Genes +5

Drivers and determinants of strain dynamics following fecal microbiota transplantation

Thomas Schmidt, Simone S. Li, Oleksandr M. Maistrenko, +19

Nature Medicine

Landscape of mobile genetic elements and their antibiotic resistance cargo in prokaryotic genomes

Supriya Khedkar, Georgy Smyshlyaev, Ivica Letunić, +9

Nucleic Acids Research

proGenomes2: an improved database for accurate and consistent habitat, taxonomic and functional annotations of prokaryotic genomes

Daniel R. Mende, Ivica Letunić, Oleksandr M. Maistrenko, +11

Nucleic Acids Research

Comparative GenomicsGeneticsGenomicsBioinformatics DatabaseHigh Throughput Sequencing +20

SPIRE: a Searchable, Planetary-scale mIcrobiome REsource

Thomas Schmidt, Anthony Fullam, Pamela Ferretti, +12

Nucleic Acids Research

GUNC: Detection of Chimerism and Contamination in Prokaryotic Genomes

Askarbek Orakov, Anthony Fullam, Luís Pedro Coelho, +5

GeneticsMolecular GeneticsGenomicsMicrobial EvolutionHigh Throughput Sequencing +14

Systematic mapping of antibiotic cross-resistance and collateral sensitivity with chemical genetics

Nazgul Sakenova, Elisabetta Cacace, Askarbek Orakov, +8

Nature Microbiology

ASAR: visual analysis of metagenomes in R

Askarbek Orakov, Nazgul Sakenova, Anatoly Sorokin, +1

Bioinformatics