Concepedia

Cell-type Proportion Estimation

Cell-Type Proportion Estimation is a computational inference task within cell-type deconvolution that determines the relative abundance of distinct cell types in a heterogeneous tissue sample from bulk omics data by leveraging signature gene expression profiles or reference datasets to disentangle cellular composition.

128

Publications

12K

Citations

823

Authors

407

Institutions

Publications per year

2017–2026

84

Parents

Publications

128

Comprehensive evaluation of transcriptome-based cell-type quantification methods for immuno-oncology

Gregor Sturm, Francesca Finotello, Florent Petitprez et al. · Bioinformatics · 2019 · 1K citations · Full text

, , +17

An estimation of the number of cells in the human body

Eva Bianconi, Allison Piovesan, Federica Facchin et al. · Annals of Human Biology · 2013 · 1K citations · Full text

, , +11

Cell type and gene expression deconvolution with BayesPrism enables Bayesian integrative analysis across bulk and single-cell RNA sequencing in oncology

Tinyi Chu, Zhong Wang, Dana Pe’er et al. · Nature Cancer · 2022 · 624 citations · Full text

, , +17

Isotropic Fractionator: A Simple, Rapid Method for the Quantification of Total Cell and Neuron Numbers in the Brain

Suzana Herculano‐Houzel, Roberto Lent · Journal of Neuroscience · 2005 · 566 citations · Full text

, , +14

GEPIA2021: integrating multiple deconvolution-based analysis into GEPIA

Chenwei Li, Zefang Tang, Wenjie Zhang et al. · Nucleic Acids Research · 2021 · 562 citations · Full text

, , +17

1–5 of 128

Authors

823

  1. LF
    Lude Franke

    University Medical Center Groningen, Netherlands

    3 publications · 143 citations

    3

    h-index

  2. PD
    Patrick Deelen

    University Medical Center Groningen, Netherlands

    3 publications · 143 citations

    3

    h-index

  3. OB
    Olivier B. Bakker

    University of Groningen, Netherlands

    3 publications · 143 citations

    3

    h-index

  4. RC
    Robert Clarke

    Georgetown University, United States

    3 publications · 109 citations

    3

    h-index

  5. EA
    E. Andrés Houseman

    Harvard University, United States

    3 publications · 333 citations

    3

    h-index

1–5 of 823

Institutions

407

  1. The University of Sydney

    Sydney, Australia

    5 h-index

    11 publications

    602 citations

  2. University of Michigan

    Ann Arbor, United States

    4 h-index

    7 publications

    614 citations

  3. University of British Columbia

    Vancouver, Canada

    4 h-index

    9 publications

    670 citations

  4. Virginia Tech

    Blacksburg, United States

    4 h-index

    17 publications

    712 citations

  5. Walter and Eliza Hall Institute of Medical Research

    Melbourne, Australia

    4 h-index

    6 publications

    729 citations

  6. University of California, Los Angeles

    Los Angeles, United States

    4 h-index

    15 publications

    899 citations

  7. The University of Melbourne

    Melbourne, Australia

    4 h-index

    12 publications

    1.8K citations

  8. Harvard University

    Cambridge, United States

    4 h-index

    7 publications

    707 citations

1–8 of 407

Venues

  1. Bioinformatics

    15 publications · 2.7K citations

    14

    h-index

  2. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 10 publications · 213 citations

    10

    h-index

  3. BMC Bioinformatics

    9 publications · 785 citations

    9

    h-index

  4. Briefings in Bioinformatics

    5 publications · 168 citations

    5

    h-index

  5. PLoS Computational Biology

    5 publications · 378 citations

    5

    h-index

1–5