Biomedical Text Mining

Biomedical text mining is a subfield of text mining that applies natural language processing and computational methods to the automated extraction and normalization of biological and medical information from biomedical literature and documents.

5.4K

Publications

290.5K

Citations

16.1K

Authors

3.3K

Institutions

Publications per year

2017–2026

2.5K

Parents

Biomedical Informatics

Children

Biomedical Concept NormalizationBiomedical Document RetrievalBiomedical Entity LinkingClassificationDisease Mention DetectionDrug Mention DetectionGene Mention DetectionGene-disease Association MiningInformation ExtractionLiterature Mining

Publications

5.4K

BioBERT: a pre-trained biomedical language representation model for biomedical text mining

Jinhyuk Lee, Wonjin Yoon, Sungdong Kim et al. · Bioinformatics · 2019 · 7K citations · Full text

Computing, Computer Science, Biomedical Text Mining +8

miRBase: from microRNA sequences to function

Ana Kozomara, Maria Birgaoanu, Sam Griffiths‐Jones · Nucleic Acids Research · 2018 · 4.9K citations · Full text

Life Sciences, Bioinformatics, Molecular Biology +17

Comparison of PubMed, Scopus, Web of Science, and Google Scholar: strengths and weaknesses

Matthew E. Falagas, Eleni Pitsouni, George Malietzis · The FASEB Journal · 2007 · 4.8K citations

Medicine, Biomedical Informatics, Biomedical Sciences +16

Domain-Specific Language Model Pretraining for Biomedical Natural Language Processing

Robert Tinn, Hao Cheng, Michael Lucas et al. · ACM Transactions on Computing for Healthcare · 2021 · 2K citations · Full text

Computing, Computer Science, Biomedical Text Mining +12

An overview of MetaMap: historical perspective and recent advances

Alan R. Aronson, François-Michel Lang · Journal of the American Medical Informatics Association · 2010 · 1.6K citations · Full text

Computing, Biomedical Informatics, Computer Science +16

1–5 of 5.4K

Authors

16.1K

ZL
Zhiyong Lu
National Center for Biotechnology Information, United States
101 publications · 12.1K citations
54
h-index
SA
Sophia Ananiadou
University of Manchester, United Kingdom
76 publications · 3.9K citations
37
h-index
HX
Hua Xu
The University of Texas Health Science Center at Houston, United States
63 publications · 3.8K citations
34
h-index
JT
Jun’ichi Tsujii
The University of Tokyo, Japan
55 publications · 4.6K citations
33
h-index
ZY
Zhihao Yang
Dalian University of Technology, China
52 publications · 3.3K citations
30
h-index

1–5 of 16.1K

Institutions

3.3K

1–8 of 3.3K

Venues

Bioinformatics
230 publications · 29.7K citations
87
h-index
BMC Bioinformatics
318 publications · 20.1K citations
74
h-index
Journal of the American Medical Informatics Association
JAMIA · 183 publications · 14.6K citations
64
h-index
Journal of Biomedical Informatics
266 publications · 17.2K citations
64
h-index
PubMed
Repository · 287 publications · 11.7K citations
54
h-index

1–5

See also Biomedical Text Mining
Core Methods	Natural Language Processing Information Retrieval Machine Learning Deep Learning Document Clustering Classification Text Summarization Topic Modeling Named Entity Recognition Relation Extraction Co-occurrence Analysis Text Preprocessing
Applications	Drug Discovery Disease Diagnosis Drug Repurposing Precision Medicine Toxicology Pharmacogenomics Sequence Database Indexing
Evaluation	Question Answering Text Summarization Named Entity Recognition Relation Extraction Text Simplification Multilabel Classification Inter-annotator Agreement Accuracy
Limitations	Software Quality Assurance