Concepedia

Binding Site Feature Mapping

Binding Site Feature Mapping is a computational method in structural bioinformatics that identifies and characterizes the physicochemical and spatial properties of ligand-binding sites in biomolecules by aligning and comparing local structural features across protein-ligand complexes.

38

Publications

2.3K

Citations

150

Authors

71

Institutions

Publications per year

2017–2026

10

Parents

Publications

38

KLIFS: A Knowledge-Based Structural Database To Navigate Kinase–Ligand Interaction Space

Oscar P. J. van Linden, Albert J. Kooistra, Rob Leurs et al. · Journal of Medicinal Chemistry · 2013 · 311 citations · Full text

, , +17

POVME 3.0: Software for Mapping Binding Pocket Flexibility

Jeffrey Wagner, Jesper Givskov Sørensen, Nathan K. Hensley et al. · Journal of Chemical Theory and Computation · 2017 · 273 citations

, , +17

Characterizing the microenvironment surrounding protein sites

Steven C. Bagley, Russ B. Altman · Protein Science · 1995 · 137 citations · Full text

, , +13

WaterScore: a novel method for distinguishing between bound and displaceable water molecules in the crystal structure of the binding site of protein-ligand complexes

Alfonso T. García‐Sosa, Ricardo L. Mancera, Philip M. Dean · Journal of Molecular Modeling · 2003 · 128 citations

, , +17

Structural features critical to the activity of an ecdysone receptor binding site

Christophe Antoniewski, Monique Laval, Jean‐Antoine Lepesant · Insect Biochemistry and Molecular Biology · 1993 · 114 citations

, , +14

1–5 of 38

Authors

150

  1. AJ
    Albert J. Kooistra

    Vrije Universiteit Amsterdam, Netherlands

    2 publications · 377 citations

    2

    h-index

  2. HV
    Herman van Vlijmen

    Janssen (Belgium), Belgium

    2 publications · 31 citations

    2

    h-index

  3. IJ
    Iwan J. P. de Esch

    Vrije Universiteit Amsterdam, Netherlands

    2 publications · 377 citations

    2

    h-index

  4. CD
    Chris de Graaf

    Vrije Universiteit Amsterdam, Netherlands

    2 publications · 377 citations

    2

    h-index

  5. RB
    Russ B. Altman

    Stanford University, United States

    2 publications · 203 citations

    2

    h-index

1–5 of 150

Institutions

71

  1. Vrije Universiteit Amsterdam

    Amsterdam, The Netherlands

    2 h-index

    11 publications

    2K citations

  2. University of California San Diego

    San Diego, United States

    2 h-index

    9 publications

    2K citations

  3. Centre National de la Recherche Scientifique

    Paris, France

    2 h-index

    10 publications

    517 citations

  4. Stanford University

    Stanford, United States

    2 h-index

    4 publications

    406 citations

  5. Ochanomizu University

    Tokyo, Japan

    1 h-index

    1 publications

    27 citations

  6. Université Paris Cité

    Paris, France

    1 h-index

    2 publications

    228 citations

  7. The University of Texas at Austin

    Austin, United States

    1 h-index

    3 publications

    126 citations

  8. Institut Jacques Monod

    Paris, France

    1 h-index

    3 publications

    342 citations

1–8 of 71

Venues

  1. Journal of Medicinal Chemistry

    4 publications · 528 citations

    4

    h-index

  2. Journal of Chemical Information and Modeling

    JCIM · 4 publications · 145 citations

    4

    h-index

  3. PLoS Computational Biology

    3 publications · 203 citations

    3

    h-index

  4. Journal of Molecular Modeling

    2 publications · 161 citations

    2

    h-index

  5. Journal of Biological Chemistry

    JBC · 2 publications · 71 citations

    2

    h-index

1–5