Concepedia

Benchmarking Genome Assemblies

Benchmarking Genome Assemblies is a computational genomics methodology that systematically evaluates the accuracy, completeness, and structural fidelity of de novo genome assemblies by comparing them against reference genomes or established quality metrics.

160

Publications

56.3K

Citations

1.2K

Authors

461

Institutions

Publications per year

2017–2026

109

Parents

Publications

160

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

Felipe A. Simão, Robert M. Waterhouse, Panagiotis Ioannidis et al. · Bioinformatics · 2015 · 14.5K citations · Full text

, , +17

QUAST: quality assessment tool for genome assemblies

Alexey Gurevich, Vladislav Saveliev, Nikolay Vyahhi et al. · Bioinformatics · 2013 · 11.5K citations · Full text

, , +14

SOAPdenovo2: an empirically improved memory-efficient short-read <i>de novo</i> assembler

Ruibang Luo, Binghang Liu, Yinlong Xie et al. · GigaScience · 2012 · 5.6K citations · Full text

, , +17

NOVOPlasty: <i>de novo</i> assembly of organelle genomes from whole genome data

Nicolas Dierckxsens, Patrick Mardulyn, Guillaume Smits · Nucleic Acids Research · 2016 · 2.9K citations · Full text

, , +17

BUSCO: Assessing Genome Assembly and Annotation Completeness

Mathieu Seppey, Mosè Manni, Evgeny M. Zdobnov · Methods in molecular biology · 2019 · 2.4K citations · Full text

, , +14

1–5 of 160

Authors

1.2K

  1. AM
    Adam M. Phillippy

    National Human Genome Research Institute, United States

    9 publications · 3.9K citations

    9

    h-index

  2. SK
    Sergey Koren

    National Human Genome Research Institute, United States

    9 publications · 3.9K citations

    9

    h-index

  3. EE
    Evan E. Eichler

    University of Washington, United States

    6 publications · 1.9K citations

    6

    h-index

  4. BP
    Benedict Paten

    University of California, Santa Cruz, United States

    6 publications · 2.2K citations

    6

    h-index

  5. KE
    Kathryn E. Holt

    The University of Melbourne, Australia

    5 publications · 1.4K citations

    5

    h-index

1–5 of 1.2K

Institutions

461

  1. Howard Hughes Medical Institute

    Chevy Chase, United States

    11 h-index

    25 publications

    11.1K citations

  2. University of Washington

    Seattle, United States

    9 h-index

    28 publications

    9.4K citations

  3. BGI Group (China)

    Shenzhen, China

    8 h-index

    74 publications

    11.9K citations

  4. University of California, Santa Cruz

    Santa Cruz, United States

    8 h-index

    45 publications

    22.8K citations

  5. Centre National de la Recherche Scientifique

    Paris, France

    7 h-index

    29 publications

    7.5K citations

  6. Cold Spring Harbor Laboratory

    Cold Spring Harbor, United States

    7 h-index

    12 publications

    5.7K citations

  7. University of California, Berkeley

    Berkeley, United States

    7 h-index

    18 publications

    4.1K citations

  8. Pacific Biosciences (United States)

    Menlo Park, United States

    7 h-index

    18 publications

    2.7K citations

1–8 of 461

Venues

  1. Bioinformatics

    17 publications · 30.3K citations

    17

    h-index

  2. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 16 publications · 599 citations

    14

    h-index

  3. GigaScience

    9 publications · 6.7K citations

    9

    h-index

  4. Genome biology

    8 publications · 2.5K citations

    8

    h-index

  5. Genome Research

    GR · 8 publications · 3.4K citations

    8

    h-index

1–5