Concepedia

Assembly-based Annotation

Assembly-Based Annotation is a metagenomic annotation approach that belongs to the class of sequence-based functional inference methods, differing from its counterparts by relying on reconstructed contiguous sequences (contigs) derived from the assembly of raw sequencing reads to assign biological functions, taxonomic identities, or metabolic pathways to microbial community members.

38

Publications

4.7K

Citations

244

Authors

135

Institutions

Publications per year

2017–2026

15

Parents

Publications

38

MitoFinder: Efficient automated large‐scale extraction of mitogenomic data in target enrichment phylogenomics

Rémi Allio, Alex Schomaker-Bastos, Jonathan Romiguier et al. · Molecular Ecology Resources · 2020 · 2K citations · Full text

, , +15

Finding the missing honey bee genes: lessons learned from a genome upgrade

Christine G. Elsik, Kim C. Worley, Anna K. Bennett et al. · BMC Genomics · 2014 · 457 citations · Full text

, , +11

Crass: identification and reconstruction of CRISPR from unassembled metagenomic data

Connor T. Skennerton, Michael Imelfort, Gene W. Tyson · Nucleic Acids Research · 2013 · 198 citations · Full text

, , +17

MOCAT2: a metagenomic assembly, annotation and profiling framework

Jens Roat Kultima, Luís Pedro Coelho, Jaime Huerta‐Cepas et al. · Bioinformatics · 2016 · 196 citations · Full text

, , +17

An Integrated Pipeline for Annotation and Visualization of Metagenomic Contigs

Xiaoli Dong, Marc Strous · Frontiers in Genetics · 2019 · 147 citations · Full text

, , +17

1–5 of 38

Authors

244

  1. AY
    Andrew Yates

    European Bioinformatics Institute, United Kingdom

    2 publications · 83 citations

    2

    h-index

  2. PF
    Paul Flicek

    European Bioinformatics Institute, United Kingdom

    2 publications · 83 citations

    2

    h-index

  3. GC
    Gisele Cavalcante da Costa

    Laboratório Nacional de Computação Científica, Brazil

    2 publications · 94 citations

    2

    h-index

  4. MR
    Matthew R. Laird

    Simon Fraser University, Canada

    2 publications · 83 citations

    2

    h-index

  5. MK
    Monika Komorowska

    University of Agriculture in Krakow, Poland

    2 publications · 83 citations

    2

    h-index

1–5 of 244

Institutions

135

  1. Universidade Federal do Rio de Janeiro

    Rio de Janeiro, Brazil

    3 h-index

    5 publications

    4.2K citations

  2. Max Delbrück Center

    Berlin, Germany

    2 h-index

    6 publications

    726 citations

  3. The University of Queensland

    Brisbane, Australia

    2 h-index

    4 publications

    671 citations

  4. Ghent University

    Ghent, Belgium

    2 h-index

    5 publications

    2K citations

  5. Virginia Tech

    Blacksburg, United States

    2 h-index

    8 publications

    348 citations

  6. SIB Swiss Institute of Bioinformatics

    Lausanne, Switzerland

    2 h-index

    8 publications

    2K citations

  7. Bielefeld University

    Bielefeld, Germany

    2 h-index

    12 publications

    221 citations

  8. Mathématiques et Informatique Appliquées du Génome à l'Environnement

    Jouy-en-Josas, France

    2 h-index

    2 publications

    217 citations

1–8 of 135

Venues

  1. Bioinformatics

    5 publications · 470 citations

    5

    h-index

  2. Nucleic Acids Research

    3 publications · 349 citations

    3

    h-index

  3. GigaScience

    3 publications · 151 citations

    3

    h-index

  4. BMC Genomics

    3 publications · 535 citations

    3

    h-index

  5. PLoS ONE

    3 publications · 132 citations

    3

    h-index

1–5