Concepedia

Alignment-based Annotation Transfer

Alignment-Based Annotation Transfer is a computational method in comparative genomics that transfers functional annotations from a well-characterized genome to a target genome based on sequence alignment, distinguished by its reliance on homology and positional correspondence to infer biological function.

5

Publications

526

Citations

12

Authors

12

Institutions

Publications per year

2017–2026

2

Parents

Publications

5

Assessing annotation transfer for genomics: quantifying the relations between protein sequence, structure and function through traditional and probabilistic scores

Cyrus A. Wilson, Julia Kreychman, Mark Gerstein · Journal of Molecular Biology · 2000 · 379 citations

, , +16

Increased alignment sensitivity improves the usage of genome alignments for comparative gene annotation

Virag Sharma, Michael Hiller · Nucleic Acids Research · 2017 · 66 citations · Full text

, , +13

CESAR 2.0 substantially improves speed and accuracy of comparative gene annotation

Virag Sharma, Peter Schwede, Michael Hiller · Bioinformatics · 2017 · 55 citations · Full text

, , +17

Combining DNA and protein alignments to improve genome annotation with LiftOn

Kuan-Hao Chao, Jakob Heinz, Celine Hoh et al. · Genome Research · 2024 · 20 citations · Full text

, , +17

Assessing functional annotation transfers with inter-species conserved coexpression: application to Plasmodium falciparum

Laurent Bréhélin, Isabelle Florent, Olivier Gascuel et al. · BMC Genomics · 2010 · 16 citations · Full text

, , +16

1–5 of 5

Authors

12

  1. MH
    Michael Hiller

    Max Planck Institute of Molecular Cell Biology and Genetics, Germany

    2 publications · 121 citations

    2

    h-index

  2. VS
    Virag Sharma

    Max Planck Institute of Molecular Cell Biology and Genetics, Germany

    2 publications · 121 citations

    2

    h-index

  3. TL
    Timo Lassmann

    RIKEN Center for Integrative Medical Sciences, Japan

    1 publications · 10 citations

    1

    h-index

  4. JK
    Julia Kreychman

    Whitney Museum of American Art, United States

    1 publications · 379 citations

    1

    h-index

  5. MG
    Mark Gerstein

    Yale University, United States

    1 publications · 379 citations

    1

    h-index

1–5 of 12

Institutions

12

  1. Max Planck Institute of Molecular Cell Biology and Genetics

    Dresden, Germany

    2 h-index

    5 publications

    297 citations

  2. Max Planck Institute for the Physics of Complex Systems

    Dresden, Germany

    2 h-index

    5 publications

    297 citations

  3. Stockholm University

    Stockholm, Sweden

    1 h-index

    1 publications

    10 citations

  4. Karolinska Institutet

    Stockholm, Sweden

    1 h-index

    2 publications

    20 citations

  5. Commissariat à l'Énergie Atomique et aux Énergies Alternatives

    Paris, France

    1 h-index

    1 publications

    16 citations

  6. Whitney Museum of American Art

    New York, United States

    1 h-index

    3 publications

    1.1K citations

  7. Laboratoire d'Informatique, de Robotique et de Microélectronique de Montpellier

    Montpellier, France

    1 h-index

    2 publications

    32 citations

  8. Centre National de la Recherche Scientifique

    Paris, France

    1 h-index

    4 publications

    64 citations

1–8 of 12

Venues

  1. Nucleic Acids Research

    1 publications · 66 citations

    1

    h-index

  2. BMC Genomics

    1 publications · 16 citations

    1

    h-index

  3. Bioinformatics

    1 publications · 55 citations

    1

    h-index

  4. Journal of Molecular Biology

    JMB · 1 publications · 379 citations

    1

    h-index

  5. BMC Bioinformatics

    1 publications · 10 citations

    1

    h-index

1–5