Juliana S. G. Fischer

Integrated analysis of shotgun proteomic data with PatternLab for proteomics 4.0

Paulo C. Carvalho, Diogo Borges Lima, Felipe da Veiga Leprevost et al. · Nature Protocols · 2015 · 299 citations · Full text

Proteomic Technology, Functional Genomics, Shotgun Proteomic Data +12

PatternLab for proteomics: a tool for differential shotgun proteomics

Paulo C. Carvalho, Juliana S. G. Fischer, Emily I. Chen et al. · BMC Bioinformatics · 2008 · 144 citations · Full text

Search engine processor: Filtering and organizing peptide spectrum matches

Paulo C. Carvalho, Juliana S. G. Fischer, Tao Xu et al. · PROTEOMICS · 2012 · 118 citations

Peptide Spectrum Matches, Engineering, Bioinformatics Database +19

Characterization of homodimer interfaces with cross-linking mass spectrometry and isotopically labeled proteins

Diogo Borges Lima, John Melchior, Jamie Morris et al. · Nature Protocols · 2018 · 64 citations

Biochemistry, Protein Assembly, Protein Folding +11

PatternLab: From Mass Spectra to Label‐Free Differential Shotgun Proteomics

Paulo C. Carvalho, Juliana S. G. Fischer, Tao Xu et al. · Current Protocols in Bioinformatics · 2012 · 61 citations

Proteomic Technology, Peptide Spectrum Matches, Functional Genomics +15