Concepedia

Integrated analysis of shotgun proteomic data with PatternLab for proteomics 4.0

Paulo C. Carvalho, Diogo Borges Lima, Felipe da Veiga Leprevost, Marlon Dias Mariano Santos, Juliana S. G. Fischer, Priscila Ferreira de Aquino, James J. Moresco, John R. Yates, Valmir C. Barbosa

Nature Protocols · 2015 · 307 citations · 55 references

DOIFull text

Open access

Concepts

References

55

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

Jürgen Cox, Matthias Mann · Nature Biotechnology · 2008 · 15.7K citations

, , +15

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

Jimmy K. Eng, Ashley L. McCormack, John R. Yates · Journal of the American Society for Mass Spectrometry · 1994 · 6.6K citations

, , +17

Empirical Statistical Model To Estimate the Accuracy of Peptide Identifications Made by MS/MS and Database Search

Andrew Keller, Alexey I. Nesvizhskii, Eugene Kolker et al. · Analytical Chemistry · 2002 · 5K citations

, , +17

Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

Brendan MacLean, Daniela M. Tomazela, Nicholas Shulman et al. · Bioinformatics · 2010 · 5K citations · Full text

, , +16

Large-scale analysis of the yeast proteome by multidimensional protein identification technology

Michael P. Washburn, Dirk Wolters, John R. Yates · Nature Biotechnology · 2001 · 4.8K citations

, , +12