A mechanical metamaterial made from a DNA hydrogel

Jong Bum Lee, Songming Peng, Dayong Yang, +8

Nature Nanotechnology

Tissue EngineeringHydrogelsBiopolymer GelDna NanotechnologyEngineering +3

Chromatin run-on and sequencing maps the transcriptional regulatory landscape of glioblastoma multiforme

Tinyi Chu, Edward J. Rice, Gregory T. Booth, +9

Nature Genetics

Neuro-oncologyChromatinTranscriptional Regulatory LandscapeGlioblastoma MultiformeTumor Heterogeneity +9

Prediction of histone post-translational modification patterns based on nascent transcription data

Zhong Wang, Alexandra G. Chivu, Lauren A. Choate, +11

Nature Genetics

Histone ModificationsChromatinChromatin RemodelingNatural SciencesGenetics +11

Enhanced transcription and translation in clay hydrogel and implications for early life evolution

Dayong Yang, Songming Peng, Mark R. Hartman, +6

Scientific Reports

RNA polymerase II dynamics shape enhancer–promoter interactions

Gilad Barshad, James J. Lewis, Alexandra G. Chivu, +8

Nature Genetics

Transcriptional RegulationNatural SciencesEnhancer–promoter InteractionsMolecular BiologyGene Expression +2

Dynamic evolution of regulatory element ensembles in primate CD4+ T cells

Charles G. Danko, Lauren A. Choate, Brooke A. Marks, +10

Nature Ecology & Evolution

Signal TransductionAdaptive Immune SystemT-regulatory CellAutoimmunityDynamic Evolution +7

A rapid, sensitive, scalable method for Precision Run-On sequencing (PRO-seq)

Julius Judd, Luke Wojenski, Lauren M. Wainman, +13

EngineeringGeneticsMolecular BiologyTranscriptomics TechnologyGenomics +24

High-yield cell-free protein production from P-gel

Nokyoung Park, Jason S. Kahn, Edward J. Rice, +5

Nature Protocols

BiomanufacturingEngineeringBiotechnologyProtein EngineeringMedicine +3

Characterizing RNA stability genome-wide through combined analysis of PRO-seq and RNA-seq data

Amit Blumberg, Yixin Zhao, Yi-Fei Huang, +6

BMC Biology

Initiation of mtDNA transcription is followed by pausing, and diverges across human cell types and during evolution

Amit Blumberg, Edward J. Rice, Anshul Kundaje, +2

Genome Research