Ming Li

PEAKS: powerful software for peptide <i>de novo</i> sequencing by tandem mass spectrometry

Bin Ma, Kaizhong Zhang, Christopher Hendrie et al. · Rapid Communications in Mass Spectrometry · 2003 · 1.4K citations

De novo peptide sequencing by deep learning

Ngoc Hieu Tran, Xianglilan Zhang, Lei Xin et al. · Proceedings of the National Academy of Sciences · 2017 · 444 citations · Full text

Convolutional Neural Network, Engineering, Machine Learning +19

Deep learning enables de novo peptide sequencing from data-independent-acquisition mass spectrometry

Ngoc Hieu Tran, Rui Qiao, Lei Xin et al. · Nature Methods · 2018 · 361 citations

Systems Biology, Medicine, Mass Spectrometry +9

Discovering patterns to extract protein–protein interactions from full texts

Minlie Huang, Xiaoyan Zhu, Yu Hao et al. · Bioinformatics · 2004 · 237 citations · Full text

PatternHunter II: highly sensitive and fast homology search.

Ming Li, Bin Ma, Derek Kisman et al. · PubMed · 2003 · 236 citations

Genetics, Homology Search Technology, Genomics +17