Zhen Li

SINFONIA: Scalable Identification of Spatially Variable Genes for Deciphering Spatial Domains

Rui Jiang, Zhen Li, Yuhang Jia et al. · Cells · 2023 · 33 citations · Full text

Life Sciences, Biology, Molecular Biology +11

Latent feature extraction with a prior-based self-attention framework for spatial transcriptomics

Zhen Li, Xiaoyang Chen, Xuegong Zhang et al. · Genome Research · 2023 · 33 citations · Full text

Computing, Bioinformatics, Data Science +17

Discrete latent embedding of single-cell chromatin accessibility sequencing data for uncovering cell heterogeneity

Xuejian Cui, Xiaoyang Chen, Zhen Li et al. · Nature Computational Science · 2024 · 26 citations

Life Sciences, Bioinformatics, Cell Biology +16

EpiAgent: foundation model for single-cell epigenomics

Xiaoyang Chen, Keyi Li, Xuejian Cui et al. · Nature Methods · 2025 · 13 citations

Life Sciences, Bioinformatics, Cell Biology +10

Cross-modality representation and multi-sample integration of spatially resolved omics data

Zhen Li, Xuejian Cui, Xiaoyang Chen et al. · Briefings in Bioinformatics · 2024 · 10 citations · Full text

Life Sciences, Bioinformatics, Biology +10