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Alan P. Boyle, Eurie L. Hong, Manoj Hariharan, +9

Genome Research

Detailed AnnotationGeneticsGenomicsGenome-wide Association StudyComputational Genomics +14

An integrated encyclopedia of DNA elements in the human genome

Ian Dunham, Anshul Kundaje, Shelley Force Aldred, +440

The Journal of the American Medical Association (JAMA) Network (American Medical Association)

A comparative encyclopedia of DNA elements in the mouse genome

Feng Yue, Yong Cheng, Alessandra Breschi, +134

Nature

DnaGeneticsGenomic MechanismMolecular BiologyGenomics +22

Architecture of the human regulatory network derived from ENCODE data

Mark Gerstein, Anshul Kundaje, Manoj Hariharan, +52

Nature

Personal Omics Profiling Reveals Dynamic Molecular and Medical Phenotypes

Rui Chen, George I. Mias, Jennifer Li‐Pook‐Than, +38

Cell

EngineeringMedicineGeneticsOmics IntegrationOmics Technology +4

Topologically associating domains are stable units of replication-timing regulation

Benjamin D. Pope, Tyrone Ryba, Vishnu Dileep, +18

Nature

GeneticsMolecular BiologyGene Regulatory NetworkStable UnitsSynchronization Protocol +19

Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors

Jie Wang, Jiali Zhuang, Sowmya Iyer, +13

Genome Research

Epigenetic ChangeGeneticsMolecular BiologyHuman Transcription FactorsSecondary Motifs +21

Diversity and clonal selection in the human T-cell repertoire

Qian Qi, Yi Liu, Yong Cheng, +7

Proceedings of the National Academy of Sciences

Lymphocyte DevelopmentAdaptive Immune SystemT-regulatory CellImmunologyCd4 T Cell Responses +14

Widespread contribution of transposable elements to the innovation of gene regulatory networks

Vasavi Sundaram, Yong Cheng, Zhihai Ma, +5

Genome Research

An encyclopedia of mouse DNA elements (Mouse ENCODE)

J Stamatoyannopoulos, M Snyder, Ross C. Hardison, +83

Genome biology