Cell · 2012 · 1.3K citations · 92 references
Life SciencesBioinformaticsGeneticsGenomicsMedical GeneticsPathway AnalysisData Preprocessing For OmicsGenomic ProfilingMulti-omics Data FusionOmics IntegrationBiomarker Discovery From Multi-omics DataDisease-associated Multi-omics SignaturesIntegrative GenomicsMulti-omics Disease SubtypingOmics Data VisualizationPathway-based Biomarker Discovery
92
The Sequence Alignment/Map format and SAMtools
Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 67.5K citations · Full text
Fast and accurate short read alignment with Burrows–Wheeler transform
Heng Li, Richard Durbin · Bioinformatics · 2009 · 62.8K citations · Full text
Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks
Paul Shannon, Andrew Markiel, Owen Ozier et al. · Genome Research · 2003 · 54.3K citations · Full text
Gene Ontology: tool for the unification of biology
Michael Ashburner, Catherine A. Ball, Judith A. Blake et al. · Nature Genetics · 2000 · 44.6K citations · Full text