Zeynep Kalender Atak

SCENIC: single-cell regulatory network inference and clustering

Sara Aibar, Carmen Bravo González‐Blas, Thomas Moerman et al. · Nature Methods · 2017 · 6.9K citations · Full text

Life Sciences, Bioinformatics, Biology +17

iRegulon: From a Gene List to a Gene Regulatory Network Using Large Motif and Track Collections

Rekin’s Janky, Annelien Verfaillie, Hana Imrichová et al. · PLoS Computational Biology · 2014 · 989 citations · Full text

Life Sciences, Bioinformatics, Systems Biology +17

Decoding the regulatory landscape of melanoma reveals TEADS as regulators of the invasive cell state

Annelien Verfaillie, Hana Imrichová, Zeynep Kalender Atak et al. · Nature Communications · 2015 · 553 citations · Full text

Medicine, Cancer Biology, Cell Biology +17

Exome sequencing identifies mutation in CNOT3 and ribosomal genes RPL5 and RPL10 in T-cell acute lymphoblastic leukemia

Kim De Keersmaecker, Zeynep Kalender Atak, Ning Li et al. · Nature Genetics · 2012 · 432 citations · Full text

Life Sciences, Genetics, Molecular Genetics +14

Robust gene expression programs underlie recurrent cell states and phenotype switching in melanoma

Jasper Wouters, Zeynep Kalender Atak, Liesbeth Minnoye et al. · Nature Cell Biology · 2020 · 284 citations · Full text

Medicine, Molecular Biology, Oncology +12