Zeynep Kalender Atak

SCENIC: single-cell regulatory network inference and clustering

Sara Aibar, Carmen Bravo González‐Blas, Thomas Moerman et al. · Nature Methods · 2017 · 6.5K citations · Full text

Functional Genomics, Engineering, Medicine +9

iRegulon: From a Gene List to a Gene Regulatory Network Using Large Motif and Track Collections

Rekin’s Janky, Annelien Verfaillie, Hana Imrichová et al. · PLoS Computational Biology · 2014 · 967 citations · Full text

Gene List, Genetics, Molecular Biology +20

Decoding the regulatory landscape of melanoma reveals TEADS as regulators of the invasive cell state

Annelien Verfaillie, Hana Imrichová, Zeynep Kalender Atak et al. · Nature Communications · 2015 · 537 citations · Full text

Exome sequencing identifies mutation in CNOT3 and ribosomal genes RPL5 and RPL10 in T-cell acute lymphoblastic leukemia

Kim De Keersmaecker, Zeynep Kalender Atak, Ning Li et al. · Nature Genetics · 2012 · 420 citations · Full text

Hematological Malignancy, Medicine, Genetics +6

Robust gene expression programs underlie recurrent cell states and phenotype switching in melanoma

Jasper Wouters, Zeynep Kalender Atak, Liesbeth Minnoye et al. · Nature Cell Biology · 2020 · 271 citations · Full text

Functional Genomics, Cell Regulation, Tumor Heterogeneity +8