iRegulon: From a Gene List to a Gene Regulatory Network Using Large Motif and Track Collections

Rekin’s Janky, Annelien Verfaillie, Hana Imrichová, +12

PLoS Computational Biology

Gene ListGeneticsMolecular BiologyTranscriptomics TechnologyGene Regulatory Network +18

Decoding the regulatory landscape of melanoma reveals TEADS as regulators of the invasive cell state

Annelien Verfaillie, Hana Imrichová, Zeynep Kalender Atak, +15

Nature Communications

Signatures of copy number alterations in human cancer

Christopher D. Steele, Ammal Abbasi, S. M. Ashiqul Islam, +21

Nature

p53 induces formation of NEAT1 lncRNA-containing paraspeckles that modulate replication stress response and chemosensitivity

Carmen Adriaens, Laura Standaert, Jasmine Barra, +18

Nature Medicine

ChromatinGenome InstabilityNatural SciencesDna ReplicationMolecular Biology +8

Recurrent rearrangements of FOS and FOSB define osteoblastoma

Matthew W. Fittall, William Mifsud, Nischalan Pillay, +19

Nature Communications

Multiplex enhancer-reporter assays uncover unsophisticated TP53 enhancer logic

Annelien Verfaillie, Dmitry Svetlichnyy, Hana Imrichová, +6

Genome Research

EngineeringGeneticsGene Regulatory NetworkGene Expression ProfilingTp53 Enhancers +15

Evidence for DNA-Binding Domain–Ligand-Binding Domain Communications in the Androgen Receptor

Christine Helsen, Vanessa Dubois, Annelien Verfaillie, +5

Molecular and Cellular Biology

Androgen ReceptorCrystal StructureMolecular BiologyMolecular PharmacologyCell Signaling +17

iRegulon and i‐cisTarget: Reconstructing Regulatory Networks Using Motif and Track Enrichment

Annelien Verfaillie, Hana Imrichová, Rekin’s Janky, +1

Current Protocols in Bioinformatics

Nova-ST: Nano-patterned ultra-dense platform for spatial transcriptomics

Suresh Poovathingal, Kristofer Davie, Lars E. Borm, +5

Cell Reports Methods

Nova-ST: Nano-Patterned Ultra-Dense platform for spatial transcriptomics

Suresh Poovathingal, Kristofer Davie, Roel Vandepoel, +4