Toward a gold standard for benchmarking gene set enrichment analysis

Ludwig Geistlinger, Gergely Csaba, Mara Santarelli, +9

Briefings in Bioinformatics

Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space

Michael C. Schatz, Anthony Philippakis, Enis Afgan, +96

Cell Genomics

EngineeringBiological DatabaseData ScienceInformatics Lab-spaceBioinformatics Database +12

Multiomic Analysis of Subtype Evolution and Heterogeneity in High-Grade Serous Ovarian Carcinoma

Ludwig Geistlinger, Sehyun Oh, Marcel Ramos, +18

Cancer Research

Software for the Integration of Multiomics Experiments in Bioconductor

Marcel Ramos, Lucas Schiffer, Angela Re, +17

Cancer Research

Multiomic Integration of Public Oncology Databases in Bioconductor

Marcel Ramos, Ludwig Geistlinger, Sehyun Oh, +8

JCO Clinical Cancer Informatics

Racial and Ethnic Subgroup Disparities in Hypertension Prevalence, New York City Health and Nutrition Examination Survey, 2013–2014

Kezhen Fei, Jesica S. Rodriguez-Lopez, Marcel Ramos, +6

Preventing Chronic Disease

Accessible, curated metagenomic data through ExperimentHub

Edoardo Pasolli, Lucas Schiffer, Paolo Manghi, +11

Microbial PathogensGeneticsGenomicsBioinformatics DatabaseHigh Throughput Sequencing +20

CNVRanger: association analysis of CNVs with gene expression and quantitative phenotypes

Vinicius Henrique da Silva, Marcel Ramos, Martien A. M. Groenen, +7

Bioinformatics

HMP16SData: Efficient Access to the Human Microbiome Project Through Bioconductor

Lucas Schiffer, Rimsha Azhar, Lori Shepherd, +6

American Journal of Epidemiology

Human Microbial FloraGenomicsHmp16sdata PackageHigh Throughput SequencingMicrobiome Biology +20

HGNChelper: identification and correction of invalid gene symbols for human and mouse

Sehyun Oh, Jasmine Abdelnabi, Ragheed Al-Dulaimi, +5

F1000Research