Anthony Philippakis

A framework for variation discovery and genotyping using next-generation DNA sequencing data

Mark A. DePristo, Eric Banks, Ryan Poplin et al. · Nature Genetics · 2011 · 12.1K citations · Full text

Dna Sequencing, Sequencing, Medicine +14

Diversity and Complexity in DNA Recognition by Transcription Factors

Gwenaël Badis, Michael F. Berger, Anthony Philippakis et al. · Science · 2009 · 1K citations · Full text

Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities

Michael F. Berger, Anthony Philippakis, Aaron M. Qureshi et al. · Nature Biotechnology · 2006 · 712 citations · Full text

Universal Dna Microarrays, Site Specificities, Transcriptional Regulation +13

Unsupervised removal of systematic background noise from droplet-based single-cell experiments using CellBender

Stephen J. Fleming, Mark Chaffin, Alessandro Arduini et al. · Nature Methods · 2023 · 690 citations

Engineering, Microscopy, Medicine +11

Variation in Homeodomain DNA Binding Revealed by High-Resolution Analysis of Sequence Preferences

Michael F. Berger, Gwenaël Badis, Andrew R. Gehrke et al. · Cell · 2008 · 634 citations · Full text

Bioinformatics, Sequence Motif, Dna Sequencing +12