Diego Ugarte La Torre

Implementation of residue-level coarse-grained models in GENESIS for large-scale molecular dynamics simulations

Cheng Tan, Jaewoon Jung, Chigusa Kobayashi et al. · PLoS Computational Biology · 2022 · 76 citations · Full text

Engineering, Material Simulation, Molecular Biology +24

GENESIS 2.1: High-Performance Molecular Dynamics Software for Enhanced Sampling and Free-Energy Calculations for Atomistic, Coarse-Grained, and Quantum Mechanics/Molecular Mechanics Models

Jaewoon Jung, Kiyoshi Yagi, Cheng Tan et al. · The Journal of Physical Chemistry B · 2024 · 31 citations · Full text

Engineering, Enhanced Sampling, Generalized-ensemble Simulation System +21

Opening of cohesin’s SMC ring is essential for timely DNA replication and DNA loop formation

Ryota Sakata, Kyoma Niwa, Diego Ugarte La Torre et al. · Cell Reports · 2021 · 23 citations · Full text

Dna Analysis, Molecular Biology, Cell Cycle +17

Coarse-grained implicit solvent lipid force field with a compatible resolution to the Cα protein representation

Diego Ugarte La Torre, Shoji Takada · The Journal of Chemical Physics · 2020 · 12 citations

Extension of the iSoLF implicit-solvent coarse-grained model for multicomponent lipid bilayers

Diego Ugarte La Torre, Shoji Takada, Yuji Sugita · The Journal of Chemical Physics · 2023 · 11 citations · Full text