Amanda Birmingham

Normalization and microbial differential abundance strategies depend upon data characteristics

Sophie Weiss, Zhenjiang Zech Xu, Shyamal D. Peddada et al. · Microbiome · 2017 · 2K citations · Full text

Adipose Tissue Macrophage-Derived Exosomal miRNAs Can Modulate In Vivo and In Vitro Insulin Sensitivity

Wei Ying, Matthew Riopel, Gautam Bandyopadhyay et al. · Cell · 2017 · 1.2K citations

Obesity, Metabolic Syndrome, Systems Biology +11

3′ UTR seed matches, but not overall identity, are associated with RNAi off-targets

Amanda Birmingham, Emily M. Anderson, Angela Reynolds et al. · Nature Methods · 2006 · 880 citations

Transcriptional Regulation, Functional Genomics, Natural Sciences +14

Correlation detection strategies in microbial data sets vary widely in sensitivity and precision

Sophie Weiss, Will Van Treuren, Catherine Lozupone et al. · The ISME Journal · 2016 · 812 citations · Full text

QIIME 2 Enables Comprehensive End‐to‐End Analysis of Diverse Microbiome Data and Comparative Studies with Publicly Available Data

Mehrbod Estaki, Lingjing Jiang, Nicholas A. Bokulich et al. · Current Protocols in Bioinformatics · 2020 · 523 citations · Full text

Bioinformatics Database, High Throughput Sequencing, Microbiome Biology +23