Normalization and microbial differential abundance strategies depend upon data characteristics

Sophie Weiss, Zhenjiang Zech Xu, Shyamal D. Peddada, +9

Microbiome

Longitudinal analysis of microbial interaction between humans and the indoor environment

Simon Lax, Daniel P. Smith, Jarrad Hampton‐Marcell, +17

Science

Longitudinal AnalysisDysbiosisExposure AssessmentHuman Microbial FloraDraft Genomes +17

Correlation detection strategies in microbial data sets vary widely in sensitivity and precision

Sophie Weiss, Will Van Treuren, Catherine Lozupone, +13

The ISME Journal

Microbial community assembly and metabolic function during mammalian corpse decomposition

Jessica L. Metcalf, Zhenjiang Zech Xu, Sophie Weiss, +22

Science

EngineeringMicrobial MetabolismMicrobial CommunityMetabolic ModelBioenergetics +17

Plasma protein patterns as comprehensive indicators of health

Stephen A. Williams, Mika Kivimäki, Claudia Langenberg, +18

Nature Medicine

Plasma ProteinBiomarker (Medicine)MedicineProteomicsPathology +7

Dynamic changes in short- and long-term bacterial composition following fecal microbiota transplantation for recurrent Clostridium difficile infection

Alexa R. Weingarden, Antonio González Ariza, Yoshiki Vázquez‐Baeza, +10

Microbiome

Tracking down the sources of experimental contamination in microbiome studies

Sophie Weiss, Amnon Amir, Embriette R. Hyde, +3

Genome biology

BiologyMicrobial DiversityDysbiosisMicrobial ContaminationExperimental Contamination +8

Changes in microbial ecology after fecal microbiota transplantation for recurrent C. difficile infection affected by underlying inflammatory bowel disease

Sahil Khanna, Yoshiki Vázquez‐Baeza, Antonio González Ariza, +12

Microbiome

Evaluating the impact of domestication and captivity on the horse gut microbiome

Jessica L. Metcalf, Se Jin Song, James T. Morton, +11

Scientific Reports

Diversity of Rickettsiales in the Microbiome of the Lone Star Tick, Amblyomma americanum

Loganathan Ponnusamy, Antonio González, Will Van Treuren, +7

Applied and Environmental Microbiology