Armin Töpfer

Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome

Aaron M. Wenger, Paul Peluso, William J. Rowell et al. · Nature Biotechnology · 2019 · 1.8K citations · Full text

Long-read Sequencing, Functional Genomics, Accurate Circular Consensus +14

Full-length haplotype reconstruction to infer the structure of heterogeneous virus populations

Francesca Di Giallonardo, Armin Töpfer, Mélanie Rey et al. · Nucleic Acids Research · 2014 · 159 citations · Full text

Genetics, Viral Polymerase Mechanism, Genomics +19

Probabilistic Inference of Viral Quasispecies Subject to Recombination

Armin Töpfer, Osvaldo Zagordi, Sandhya Prabhakaran et al. · Journal of Computational Biology · 2013 · 154 citations

Recombination Events, Viral Evolution, Genetics +14

DeepConsensus improves the accuracy of sequences with a gap-aware sequence transformer

Gunjan Baid, Daniel E. Cook, Kishwar Shafin et al. · Nature Biotechnology · 2022 · 145 citations

Sequence Modelling, Engineering, Machine Learning +9

Viral Quasispecies Assembly via Maximal Clique Enumeration

Armin Töpfer, Tobias Marschall, Rowena A. Bull et al. · PLoS Computational Biology · 2014 · 113 citations · Full text

Genetics, Molecular Biology, Genomics +20